TransCirc

CircID: TC-hsa-CDH10_0007

CircRNA information

Taxonomy:

Homo sapiens

Genome Version:

hg38

Location:

chr5:24491576~24537674

Gene:

CDH10

Gene type:

protein_coding

Strand:

exons:

ORFS:

Xref:

circAtlas: hsa-CDH10_0009
circpedia2: HSA_CIRCpedia_164390

Evidences

Ribosome/polysome profiling	0.0	Evidence score: 1.971791 MS Q-Value:
ORF	1.0
IRES sequence	0.41529
Translation initiation site	0.0
SeqComp	0.5565
m6A sites	0.0
MS evidence	0.0

Other evidences Upload

File	Author	Date

Structure

IRES

m6A

TIS

circRNA sequence

ACATGAAAACCTAATAAATGAACAATTTATAGTATATTTCTCAAACTGATTATTTGTCTTATCTATATATTAATTGCATTGTACTTGTTTTTTAGGAAAATGTATATCAATTTTATATTTTACATAAATATGTTTTTATTTATATGTTAAACCTTGGTGATCACATTGGGAAAAATTTACTATCCCAAACCATTTGTAATATTTTAAAATTTGTTTTAGATAATACTGCCAGAATCTTAACCAGAAAAAATGG

Exons

exon1:24492046~24491794

IRES sequence

24492035~24492028
24492023~24492018
24492014~24492009
24492003~24491993
24491983~24491973
24491934~24491926
24491925~24491916
24491907~24491901
24491876~24491868
24491850~24491836
24491827~24491819
24491802~24491796

circRNA specific ORFs

Attribute

ORF struct

circRNA sequence

Amino acid sequence

MS evidence

Start: 144
Stop: 49
Length: 159
Translation cycles: 1

ATGTTAAACCTTGGTGATCACATTGGGAAAAATTTACTATCCCAAACCATTTGTAATATTTTAAAATTTGTTTTAGATAATACTGCCAGAATCTTAACCAGAAAAAATGGACATGAAAACCTAATAAATGAACAATTTATAGTATATTTCTCAAACTGA

MLNLGDHIGKNLLSQTICNILKFVLDNTARILTRKNGHENLINEQFIVYFSN*