TransCirc

CircID: TC-hsa-CHAF1A_0026

CircRNA information

Taxonomy:

Homo sapiens

Genome Version:

hg38

Location:

chr19:4430549~4432207

Gene:

CHAF1A

Gene type:

protein_coding

Strand:

exons:

ORFS:

Xref:

circAtlas: hsa-CHAF1A_0003
circBase: hsa_circ_0006240
circRNADb: hsa_circ_24735
deepbase2: hsa-circRNA3792-10
circpedia2: HSA_CIRCpedia_26076

Evidences

Ribosome/polysome profiling	0.33333	Evidence score: 2.175384 MS Q-Value:
ORF	1.0
IRES sequence	0.01763
Translation initiation site	0.0
SeqComp	0.82442
m6A sites	0.0
MS evidence	0.0

Other evidences Upload

File	Author	Date

Structure

IRES

m6A

TIS

circRNA sequence

GATGATGATGACGACATGGGAGAGGATGAAGATGAGGACGATGGTTTCTTTGTGCCCCATGGGTACCTGTCTGAGGACGAAGGTGTGACAGAGGAGTGTGCCGACCCTGAGAACCATAAGGTCCGCCAGAAACTGAAGGCCAAGGAGTGGGACGAGTTCCTGGCTAAGGGGAAGCGCTTTCGCGTCCTGCAACCTGTGAAGATCGGCTGCGTGTGGGCGGCTGACAGAGACTGCGCAGGCGATGACCTGAAGGTACTGCAGCAGTTCGCAGCCTGCTTCCTGGAGACCCTGCCGGCCCAGGAGGAGCAGACGCCCAAGGCCTCCAAGCGGGAGAGGAGAGACGAGCAGA

Exons

exon1:4430549~4430641
exon2:4431952~4432207

IRES sequence

4431989~4431994

circRNA specific ORFs

Attribute

ORF struct

circRNA sequence

Amino acid sequence

MS evidence

Start: 16
Stop: 5
Length: 339
Translation cycles: 1

ATGGGAGAGGATGAAGATGAGGACGATGGTTTCTTTGTGCCCCATGGGTACCTGTCTGAGGACGAAGGTGTGACAGAGGAGTGTGCCGACCCTGAGAACCATAAGGTCCGCCAGAAACTGAAGGCCAAGGAGTGGGACGAGTTCCTGGCTAAGGGGAAGCGCTTTCGCGTCCTGCAACCTGTGAAGATCGGCTGCGTGTGGGCGGCTGACAGAGACTGCGCAGGCGATGACCTGAAGGTACTGCAGCAGTTCGCAGCCTGCTTCCTGGAGACCCTGCCGGCCCAGGAGGAGCAGACGCCCAAGGCCTCCAAGCGGGAGAGGAGAGACGAGCAGAGATGA

MGEDEDEDDGFFVPHGYLSEDEGVTEECADPENHKVRQKLKAKEWDEFLAKGKRFRVLQPVKIGCVWAADRDCAGDDLKVLQQFAACFLETLPAQEEQTPKASKRERRDEQR*

Start: 273
Stop: 88
Length: 165
Translation cycles: 1

CTGCTTCCTGGAGACCCTGCCGGCCCAGGAGGAGCAGACGCCCAAGGCCTCCAAGCGGGAGAGGAGAGACGAGCAGAGATGATGATGACGACATGGGAGAGGATGAAGATGAGGACGATGGTTTCTTTGTGCCCCATGGGTACCTGTCTGAGGACGAAGGTGTGA

LLPGDPAGPGGADAQGLQAGEERRAEMMMTTWERMKMRTMVSLCPMGTCLRTKV*