CircID: TC-hsa-CHD5_0009
CircRNA information
Taxonomy:
Genome Version:
hg38
Location:
chr1:6128499~6130283
Xref:
Evidences
| Ribosome/polysome profiling | 0.0 |
Evidence score: 1.877929
MS Q-Value:
|
| ORF | 1.0 | |
| IRES sequence | 0.20149 | |
| Translation initiation site | 0.0 | |
| SeqComp | 0.67644 | |
| m6A sites | 0.0 | |
| MS evidence | 0.0 |
Other evidences Upload
| File | Author | Date |
|---|
Structure
IRES
m6A
TIS
circRNA sequence
GTGGTCTGGGCATCAACCTGGCCACGGCGGACACTGTCATCATCTACGACTCGGACTGGAACCCGCACAATGACATCCAGGCCTTCAGCCGCGCCCACCGCATCGGCCAGAACAAGAAGGTGATGATCTACCGCTTCGTGACTCGGGCCTCGGTGGAGGAGCGCATCACGCAGGTGGCCAAGCGCAAGATGATGCTCACCCACCTGGTGGTGCGGCCCGGCCTCGGCTCCAAGTCGGGGTCCATGACCAAGCAGGAGCTGGACGACATCCTCAAGTTCGGCACGGAGGAACTCTTCAAGGACGACGTGGAGGGCATGATGTCTCAGGGCCAGAGGCCGGTCACACCCATCCCTGATGTCCAGTCCTCCAAAGGGGGGAACTTGGCCGCCAGTGCAAAGAAGAAGCACGGTAGCACCCCGCCAG
Exons
- exon1:6130283~6130204
- exon2:6129069~6128838
- exon3:6128609~6128499
IRES sequence
- 6130213~6130208
- 6129036~6129031
- 6128526~6128518
circRNA specific ORFs
Attribute
ORF struct
circRNA sequence
Amino acid sequence
MS evidence
- Start: 123
- Stop: 122
- Length: 1269
- Translation cycles: 3
ATGATCTACCGCTTCGTGACTCGGGCCTCGGTGGAGGAGCGCATCACGCAGGTGGCCAAGCGCAAGATGATGCTCACCCACCTGGTGGTGCGGCCCGGCCTCGGCTCCAAGTCGGGGTCCATGACCAAGCAGGAGCTGGACGACATCCTCAAGTTCGGCACGGAGGAACTCTTCAAGGACGACGTGGAGGGCATGATGTCTCAGGGCCAGAGGCCGGTCACACCCATCCCTGATGTCCAGTCCTCCAAAGGGGGGAACTTGGCCGCCAGTGCAAAGAAGAAGCACGGTAGCACCCCGCCAGGTGGTCTGGGCATCAACCTGGCCACGGCGGACACTGTCATCATCTACGACTCGGACTGGAACCCGCACAATGACATCCAGGCCTTCAGCCGCGCCCACCGCATCGGCCAGAACAAGAAGGTGATGATCTACCGCTTCGTGACTCGGGCCTCGGTGGAGGAGCGCATCACGCAGGTGGCCAAGCGCAAGATGATGCTCACCCACCTGGTGGTGCGGCCCGGCCTCGGCTCCAAGTCGGGGTCCATGACCAAGCAGGAGCTGGACGACATCCTCAAGTTCGGCACGGAGGAACTCTTCAAGGACGACGTGGAGGGCATGATGTCTCAGGGCCAGAGGCCGGTCACACCCATCCCTGATGTCCAGTCCTCCAAAGGGGGGAACTTGGCCGCCAGTGCAAAGAAGAAGCACGGTAGCACCCCGCCAGGTGGTCTGGGCATCAACCTGGCCACGGCGGACACTGTCATCATCTACGACTCGGACTGGAACCCGCACAATGACATCCAGGCCTTCAGCCGCGCCCACCGCATCGGCCAGAACAAGAAGGTGATGATCTACCGCTTCGTGACTCGGGCCTCGGTGGAGGAGCGCATCACGCAGGTGGCCAAGCGCAAGATGATGCTCACCCACCTGGTGGTGCGGCCCGGCCTCGGCTCCAAGTCGGGGTCCATGACCAAGCAGGAGCTGGACGACATCCTCAAGTTCGGCACGGAGGAACTCTTCAAGGACGACGTGGAGGGCATGATGTCTCAGGGCCAGAGGCCGGTCACACCCATCCCTGATGTCCAGTCCTCCAAAGGGGGGAACTTGGCCGCCAGTGCAAAGAAGAAGCACGGTAGCACCCCGCCAGGTGGTCTGGGCATCAACCTGGCCACGGCGGACACTGTCATCATCTACGACTCGGACTGGAACCCGCACAATGACATCCAGGCCTTCAGCCGCGCCCACCGCATCGGCCAGAACAAGAAGGTG
MIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKSGSMTKQELDDILKFGTEELFKDDVEGMMSQGQRPVTPIPDVQSSKGGNLAASAKKKHGSTPPGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKSGSMTKQELDDILKFGTEELFKDDVEGMMSQGQRPVTPIPDVQSSKGGNLAASAKKKHGSTPPGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKSGSMTKQELDDILKFGTEELFKDDVEGMMSQGQRPVTPIPDVQSSKGGNLAASAKKKHGSTPPGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKV