CircID: TC-hsa-EMSY_0054
CircRNA information
Taxonomy:
Genome Version:
hg38
Location:
chr11:76542216~76546297
Xref:
circAtlas: hsa-EMSY_0014
circRNADb: hsa_circ_00781
deepbase2: hsa-circRNA1494-1
circpedia2: HSA_CIRCpedia_5674
circRNADb: hsa_circ_00781
deepbase2: hsa-circRNA1494-1
circpedia2: HSA_CIRCpedia_5674
Evidences
| Ribosome/polysome profiling | 0.33333 |
Evidence score: 2.630278
MS Q-Value:
|
| ORF | 1.0 | |
| IRES sequence | 0.39699 | |
| Translation initiation site | 0.0 | |
| SeqComp | 0.89996 | |
| m6A sites | 0.0 | |
| MS evidence | 0.0 |
Other evidences Upload
| File | Author | Date |
|---|
Structure
IRES
m6A
TIS
circRNA sequence
TCAGCCATCGCTCCCAGCCCCAACAGCCTTCCCAGCCCCAGCGGACCCTGCTCCAGCATGTGGCTCAGTCACAGACCGCAACACAGACTTCGGTGGTGGTGAAGTCCATCCCAGCATCTTCCCCTGGAGCAATCACCCACATTATGCAGCAGGCATTAAGCAGTCACACTGCTTTTACCAAACACAGCGAGGAACTTGGAACTGAGGAGGGCGAGGTTGAAGAGATGGACACTTTAGACCCTCAGACAGGTCTGTTTTACCGATCTGCCCTGACTCAGTCACAGTCAGCTAAACAGCAGAAACTTAGCCAGCCCCCGCTGGAACAGACTCAGCTGCAAGTGAAAACTCTGCAGTGCTTCCAGACTAAACAGAAGCAGACCATCCACCTGCAGGCAGACCAGCTCCAGCACAAACTCCCGCAAATGCCCCAGCTTTCCATCAGGCATCAAAAACTCACCCCTCTCCAGCAAGAACAAGCACAGCCCAAGCCAGATGTACAGCACACACAGCATCCCATGGTGGCCAAAGACAGGCAGCTTCCTACCTTAATGGCACAGCCCCCGCAAACTGTAGTACAGGTGCTTGCAGTGAAAACCACGCAGCAGCTCCCTAAACTGCAGCAGGCTCCGAACCAACCAAAAATCTACGTGCAACCCCAAACCCCCCAGAGCCAAATGTCGCTCCCAGCTTCTTCAGAGAAACAGACGGCAAGCCAGGTGGAGCAGCCAATTATAACCCAAGGATCCTCTGTTACAAAGATAACTTTTGAGGGGCGCCAGCCTCCCACAGTTACAAAGATAACTGGTGGCAGTTCTGTGCCTAAGCTGACATCACCAGTTACAAGCATATCTCCCATTCAGGCCTCTGAGAAGACAGCAGTGTCTGACATTTTGAAAATGTCTTTGATGGAAGCTCAGATTGATACAAATGTAGAACATATGATAGTGGATCCCCCAAAGAAGGCTCTTGCCACTAGCATGCTCACTGGTGAAGCAGGATCATTACCCTCCACCCACATGGTGGTGGCAGGGATGGCGAATTCCACTCCCCAGCAACAGAAATGTAGAGAGTCCTGTTCGAGTCCATCCACTGTTGGCTCTTCCCTAACGACAAGGAAAATTGATCCACCAGCAGTGCCTGCGACAGGCCAGTTCATGCGTATTCAGAATGTAGGCCAAAAGAAAGCTGAAGAGAGTCCAGCAGAAATTATCATCCAG
Exons
- exon1:76542216~76542367
- exon2:76544259~76544822
- exon3:76545797~76546297
IRES sequence
- 76544306~76544311
- 76544396~76544401
- 76544471~76544476
- 76544553~76544558
- 76544631~76544636
- 76544743~76544749
- 76545808~76545815
- 76545836~76545841
- 76545875~76545880
- 76545906~76545911
- 76545926~76545931
- 76545948~76545953
- 76545964~76545969
- 76546002~76546007
- 76546014~76546020
- 76546037~76546042
- 76546196~76546201
- 76546257~76546262
- 76546284~76546290
circRNA specific ORFs
Attribute
ORF struct
circRNA sequence
Amino acid sequence
MS evidence
- Start: 1186
- Stop: 205
- Length: 237
- Translation cycles: 1
- Start: 144
- Stop: 102
- Length: 1176
- Translation cycles: 1
ATGCAGCAGGCATTAAGCAGTCACACTGCTTTTACCAAACACAGCGAGGAACTTGGAACTGAGGAGGGCGAGGTTGAAGAGATGGACACTTTAGACCCTCAGACAGGTCTGTTTTACCGATCTGCCCTGACTCAGTCACAGTCAGCTAAACAGCAGAAACTTAGCCAGCCCCCGCTGGAACAGACTCAGCTGCAAGTGAAAACTCTGCAGTGCTTCCAGACTAAACAGAAGCAGACCATCCACCTGCAGGCAGACCAGCTCCAGCACAAACTCCCGCAAATGCCCCAGCTTTCCATCAGGCATCAAAAACTCACCCCTCTCCAGCAAGAACAAGCACAGCCCAAGCCAGATGTACAGCACACACAGCATCCCATGGTGGCCAAAGACAGGCAGCTTCCTACCTTAATGGCACAGCCCCCGCAAACTGTAGTACAGGTGCTTGCAGTGAAAACCACGCAGCAGCTCCCTAAACTGCAGCAGGCTCCGAACCAACCAAAAATCTACGTGCAACCCCAAACCCCCCAGAGCCAAATGTCGCTCCCAGCTTCTTCAGAGAAACAGACGGCAAGCCAGGTGGAGCAGCCAATTATAACCCAAGGATCCTCTGTTACAAAGATAACTTTTGAGGGGCGCCAGCCTCCCACAGTTACAAAGATAACTGGTGGCAGTTCTGTGCCTAAGCTGACATCACCAGTTACAAGCATATCTCCCATTCAGGCCTCTGAGAAGACAGCAGTGTCTGACATTTTGAAAATGTCTTTGATGGAAGCTCAGATTGATACAAATGTAGAACATATGATAGTGGATCCCCCAAAGAAGGCTCTTGCCACTAGCATGCTCACTGGTGAAGCAGGATCATTACCCTCCACCCACATGGTGGTGGCAGGGATGGCGAATTCCACTCCCCAGCAACAGAAATGTAGAGAGTCCTGTTCGAGTCCATCCACTGTTGGCTCTTCCCTAACGACAAGGAAAATTGATCCACCAGCAGTGCCTGCGACAGGCCAGTTCATGCGTATTCAGAATGTAGGCCAAAAGAAAGCTGAAGAGAGTCCAGCAGAAATTATCATCCAGTCAGCCATCGCTCCCAGCCCCAACAGCCTTCCCAGCCCCAGCGGACCCTGCTCCAGCATGTGGCTCAGTCACAGACCGCAACACAGACTTCGGTGGTGGTGA
MQQALSSHTAFTKHSEELGTEEGEVEEMDTLDPQTGLFYRSALTQSQSAKQQKLSQPPLEQTQLQVKTLQCFQTKQKQTIHLQADQLQHKLPQMPQLSIRHQKLTPLQQEQAQPKPDVQHTQHPMVAKDRQLPTLMAQPPQTVVQVLAVKTTQQLPKLQQAPNQPKIYVQPQTPQSQMSLPASSEKQTASQVEQPIITQGSSVTKITFEGRQPPTVTKITGGSSVPKLTSPVTSISPIQASEKTAVSDILKMSLMEAQIDTNVEHMIVDPPKKALATSMLTGEAGSLPSTHMVVAGMANSTPQQQKCRESCSSPSTVGSSLTTRKIDPPAVPATGQFMRIQNVGQKKAEESPAEIIIQSAIAPSPNSLPSPSGPCSSMWLSHRPQHRLRWW*