CircID: TC-hsa-GBAS_0008
CircRNA information
Taxonomy:
Genome Version:
hg38
Location:
chr7:55978126~55994988
Xref:
Evidences
| Ribosome/polysome profiling | 0.0 |
Evidence score: 3.177522
MS Q-Value:
|
| ORF | 1.0 | |
| IRES sequence | 0.40198 | |
| Translation initiation site | 1.0 | |
| SeqComp | 0.77554 | |
| m6A sites | 0.0 | |
| MS evidence | 0.0 |
Other evidences Upload
| File | Author | Date |
|---|
Structure
IRES
m6A
TIS
circRNA sequence
GACATGGACATCTTCCAGCAACAGATCTCGAGAAGACAGCTGGCTAAAATCCTTATTTGTCCGGAAAGTTGATCCAAGAAAAGATGCCCACTCCAATCTCCTAGCCAAAAAGGAAACAAGCAATCTATACAAATTACAGTTTCACAATGTTAAACCGGAATGCCTAGAAGCATACAACAAAATTTGTCAAGAGGTGTTGCCAAAGATTCACGAAGATAAACACTACCCTTGTACTTTGGTGGGGACTTGGAACACGTGGTATGGCGAGCAGGACCAAGCTGTCCACCTCTGGAGGTATGAAGGAGGCTATCCAGCCCTCACAGAAGTCATGAATAAACTCAGAGAAAATAAGGAATTTTTGGAATTTCGTAAGGCAAGAAGTGACATGCTTCTCTCCAGGAAGAATCAGCTCCTGTTGGAGTTCAGTTTCTGGAATGAGCCTGTGCCAAGATCCGGACCTAATATATATGAACTCAGGTCTTACCAACTCCGACCAGGAACCATGATTGAATGGGGCAATTACTGGGCTCGTGCAATCCGCTTCAGACAGGATGGTAACGAAGCCGTCGGAGGATTCTTCTCTCAGATTGGGCAGCTGTACATGGTGCACCATCTTTGGG
Exons
- exon1:55978126~55978265
- exon2:55978350~55978395
- exon3:55981473~55981567
- exon4:55982210~55982280
- exon5:55983728~55983868
- exon6:55984847~55984878
- exon7:55994894~55994988
IRES sequence
- 55978156~55978161
- 55978172~55978177
- 55978204~55978209
- 55978231~55978236
- 55978239~55978244
- 55978251~55978261
- 55978381~55978393
- 55981499~55981508
- 55982258~55982266
- 55982273~55982280
- 55983751~55983756
- 55983757~55983762
- 55983775~55983781
- 55983835~55983845
Translation initiation site
- 55994937~55994939
circRNA specific ORFs
Attribute
ORF struct
circRNA sequence
Amino acid sequence
MS evidence
- Start: 616
- Stop: 47
- Length: 672
- Translation cycles: 2
TTGGGGACATGGACATCTTCCAGCAACAGATCTCGAGAAGACAGCTGGCTAAAATCCTTATTTGTCCGGAAAGTTGATCCAAGAAAAGATGCCCACTCCAATCTCCTAGCCAAAAAGGAAACAAGCAATCTATACAAATTACAGTTTCACAATGTTAAACCGGAATGCCTAGAAGCATACAACAAAATTTGTCAAGAGGTGTTGCCAAAGATTCACGAAGATAAACACTACCCTTGTACTTTGGTGGGGACTTGGAACACGTGGTATGGCGAGCAGGACCAAGCTGTCCACCTCTGGAGGTATGAAGGAGGCTATCCAGCCCTCACAGAAGTCATGAATAAACTCAGAGAAAATAAGGAATTTTTGGAATTTCGTAAGGCAAGAAGTGACATGCTTCTCTCCAGGAAGAATCAGCTCCTGTTGGAGTTCAGTTTCTGGAATGAGCCTGTGCCAAGATCCGGACCTAATATATATGAACTCAGGTCTTACCAACTCCGACCAGGAACCATGATTGAATGGGGCAATTACTGGGCTCGTGCAATCCGCTTCAGACAGGATGGTAACGAAGCCGTCGGAGGATTCTTCTCTCAGATTGGGCAGCTGTACATGGTGCACCATCTTTGGGGACATGGACATCTTCCAGCAACAGATCTCGAGAAGACAGCTGGCTAA
- Start: 329
- Stop: 47
- Length: 339
- Translation cycles: 1
ATGAATAAACTCAGAGAAAATAAGGAATTTTTGGAATTTCGTAAGGCAAGAAGTGACATGCTTCTCTCCAGGAAGAATCAGCTCCTGTTGGAGTTCAGTTTCTGGAATGAGCCTGTGCCAAGATCCGGACCTAATATATATGAACTCAGGTCTTACCAACTCCGACCAGGAACCATGATTGAATGGGGCAATTACTGGGCTCGTGCAATCCGCTTCAGACAGGATGGTAACGAAGCCGTCGGAGGATTCTTCTCTCAGATTGGGCAGCTGTACATGGTGCACCATCTTTGGGGACATGGACATCTTCCAGCAACAGATCTCGAGAAGACAGCTGGCTAA