CircID: TC-hsa-H2AFY_0010
CircRNA information
Taxonomy:
Genome Version:
hg38
Location:
chr5:135360497~135370142
Xref:
circAtlas: hsa-H2AFY_0001
circBase: hsa_circ_0005241
circRNADb: hsa_circ_11578
deepbase2: hsa-circRNA14422-6
circpedia2: HSA_CIRCpedia_50300
circBase: hsa_circ_0005241
circRNADb: hsa_circ_11578
deepbase2: hsa-circRNA14422-6
circpedia2: HSA_CIRCpedia_50300
Evidences
| Ribosome/polysome profiling | 0.33333 |
Evidence score: 2.514272
MS Q-Value:
|
| ORF | 1.0 | |
| IRES sequence | 0.32094 | |
| Translation initiation site | 0.0 | |
| SeqComp | 0.85999 | |
| m6A sites | 0.0 | |
| MS evidence | 0.0 |
Other evidences Upload
| File | Author | Date |
|---|
Structure
IRES
m6A
TIS
circRNA sequence
CGGAGATTCTGGAGCTGGCTGGCAATGCAGCGAGAGACAACAAGAAGGGACGGGTCACACCCCGGCACATCCTGCTGGCTGTGGCCAATGATGAAGAGCTGAATCAGCTGCTAAAAGGAGTCACCATAGCCAGTGGGGGTGTGTTACCCAACATCCACCCCGAGTTGCTAGCGAAGAAGCGGGGATCCAAAGGAAAGTTGGAAGCCATCATCACACCACCCCCAGCCAAAAAGGCCAAGTCTCCATCCCAGAAGAAGCCTGTATCTAAAAAAGCAGGAGGCAAGAAAGGGGCCCGGAAATCCAAGAAGAAGCAGGGTGAAGTCAGTAAGGCAGCCAGCGCCGACAGCACAACCGAGGGCACACCTGCCGACGGCTTCACAGTCCTCTCCACCAAGAGCCTCTTCCTTGGCCAGAAG
Exons
- exon1:135370142~135370036
- exon2:135369603~135369406
- exon3:135360607~135360497
IRES sequence
- 135370141~135370136
- 135370101~135370096
- 135369538~135369532
- 135369484~135369479
- 135369461~135369454
- 135369445~135369439
- 135369414~135369409
- 135369408~135360602
circRNA specific ORFs
Attribute
ORF struct
circRNA sequence
Amino acid sequence
MS evidence
- Start: 259
- Stop: 91
- Length: 249
- Translation cycles: 1
- Start: 9
- Stop: 102
- Length: 510
- Translation cycles: 1
CTGGAGCTGGCTGGCAATGCAGCGAGAGACAACAAGAAGGGACGGGTCACACCCCGGCACATCCTGCTGGCTGTGGCCAATGATGAAGAGCTGAATCAGCTGCTAAAAGGAGTCACCATAGCCAGTGGGGGTGTGTTACCCAACATCCACCCCGAGTTGCTAGCGAAGAAGCGGGGATCCAAAGGAAAGTTGGAAGCCATCATCACACCACCCCCAGCCAAAAAGGCCAAGTCTCCATCCCAGAAGAAGCCTGTATCTAAAAAAGCAGGAGGCAAGAAAGGGGCCCGGAAATCCAAGAAGAAGCAGGGTGAAGTCAGTAAGGCAGCCAGCGCCGACAGCACAACCGAGGGCACACCTGCCGACGGCTTCACAGTCCTCTCCACCAAGAGCCTCTTCCTTGGCCAGAAGCGGAGATTCTGGAGCTGGCTGGCAATGCAGCGAGAGACAACAAGAAGGGACGGGTCACACCCCGGCACATCCTGCTGGCTGTGGCCAATGATGAAGAGCTGA