CircID: TC-hsa-IQCJ-SCHIP1_0017
CircRNA information
Taxonomy:
Genome Version:
hg38
Location:
chr3:159764443~159765138
Xref:
circAtlas: hsa-IQCJ-SCHIP1_0001
circRNADb: hsa_circ_03218
deepbase2: hsa-circRNA5793
circpedia2: HSA_CIRCpedia_44242
circRNADb: hsa_circ_03218
deepbase2: hsa-circRNA5793
circpedia2: HSA_CIRCpedia_44242
Evidences
| Ribosome/polysome profiling | 0.0 |
Evidence score: 2.798535
MS Q-Value:
|
| ORF | 1.0 | |
| IRES sequence | 0.13408 | |
| Translation initiation site | 1.0 | |
| SeqComp | 0.66446 | |
| m6A sites | 0.0 | |
| MS evidence | 0.0 |
Other evidences Upload
| File | Author | Date |
|---|
Structure
IRES
m6A
TIS
circRNA sequence
GATTACCGAGAGGATGGGATGGATCTAGGCAGTGACGCCGGCAGCAGCAGCAGCAGCAGCCGCGCCAGTTCACAGTCCAACTCCACCAAAGTGACCCCTTGCTCCGAGTGCAAATCTTCATCGTCGCCGGGGGGCAGCCTGGACTTGGTGTCTGCCCTGGAGGACTATGAGGAGCCCTTCCCGGTCTACCAGAAGAAGGTGATTGATGAGTGGGCGCCGGAGGAGGACGGGGAGGAGGAGGAAGAGGAGGACGAGCGCGACCAGCGAGGGTACCGGGATGACCGCTCTCCGGCCCGGGAACCGGGGGACGTAAGCGCCAGGACCCGCAGCGGCGGCGGCGGGGGCAGGAGCGCCACCACCGCCATGCCGCCCCCGGTGCCCAACGGCAACCTCCACCAGCACGACCCCCAGGACCTCAGGCACAATGGCAACGTGGTGGTGGCTGGCCGGCCGAGCTGTTCCCGGGGCCCCCGCCGGGCGATCCAAAAGCCCCAGCCGGCTGGGGGCCGGCGCAGTGGCCGCGGCCCGGCGGCTGGGGGGCTCTGCCTTCAGCCCCCAGACGGCGGGACGTGCGTCCCCGAAGAGCCCCCGGTGCCACCTATGGATTGGGAGGCGCTGGAGAAGCATCTGGCCGGGCTGCAGTTCCGGGAGCAGGAGGTACGGAACCAGGGCCAGGCGAGGACCAACTCCACCTCC
Exons
- exon1:159764443~159765138
IRES sequence
- 159764633~159764640
Translation initiation site
- 159764456~159764458
- 159764533~159764535
circRNA specific ORFs
Attribute
ORF struct
circRNA sequence
Amino acid sequence
MS evidence
- Start: 19
- Stop: 18
- Length: 2088
- Translation cycles: 3
ATGGATCTAGGCAGTGACGCCGGCAGCAGCAGCAGCAGCAGCCGCGCCAGTTCACAGTCCAACTCCACCAAAGTGACCCCTTGCTCCGAGTGCAAATCTTCATCGTCGCCGGGGGGCAGCCTGGACTTGGTGTCTGCCCTGGAGGACTATGAGGAGCCCTTCCCGGTCTACCAGAAGAAGGTGATTGATGAGTGGGCGCCGGAGGAGGACGGGGAGGAGGAGGAAGAGGAGGACGAGCGCGACCAGCGAGGGTACCGGGATGACCGCTCTCCGGCCCGGGAACCGGGGGACGTAAGCGCCAGGACCCGCAGCGGCGGCGGCGGGGGCAGGAGCGCCACCACCGCCATGCCGCCCCCGGTGCCCAACGGCAACCTCCACCAGCACGACCCCCAGGACCTCAGGCACAATGGCAACGTGGTGGTGGCTGGCCGGCCGAGCTGTTCCCGGGGCCCCCGCCGGGCGATCCAAAAGCCCCAGCCGGCTGGGGGCCGGCGCAGTGGCCGCGGCCCGGCGGCTGGGGGGCTCTGCCTTCAGCCCCCAGACGGCGGGACGTGCGTCCCCGAAGAGCCCCCGGTGCCACCTATGGATTGGGAGGCGCTGGAGAAGCATCTGGCCGGGCTGCAGTTCCGGGAGCAGGAGGTACGGAACCAGGGCCAGGCGAGGACCAACTCCACCTCCGATTACCGAGAGGATGGGATGGATCTAGGCAGTGACGCCGGCAGCAGCAGCAGCAGCAGCCGCGCCAGTTCACAGTCCAACTCCACCAAAGTGACCCCTTGCTCCGAGTGCAAATCTTCATCGTCGCCGGGGGGCAGCCTGGACTTGGTGTCTGCCCTGGAGGACTATGAGGAGCCCTTCCCGGTCTACCAGAAGAAGGTGATTGATGAGTGGGCGCCGGAGGAGGACGGGGAGGAGGAGGAAGAGGAGGACGAGCGCGACCAGCGAGGGTACCGGGATGACCGCTCTCCGGCCCGGGAACCGGGGGACGTAAGCGCCAGGACCCGCAGCGGCGGCGGCGGGGGCAGGAGCGCCACCACCGCCATGCCGCCCCCGGTGCCCAACGGCAACCTCCACCAGCACGACCCCCAGGACCTCAGGCACAATGGCAACGTGGTGGTGGCTGGCCGGCCGAGCTGTTCCCGGGGCCCCCGCCGGGCGATCCAAAAGCCCCAGCCGGCTGGGGGCCGGCGCAGTGGCCGCGGCCCGGCGGCTGGGGGGCTCTGCCTTCAGCCCCCAGACGGCGGGACGTGCGTCCCCGAAGAGCCCCCGGTGCCACCTATGGATTGGGAGGCGCTGGAGAAGCATCTGGCCGGGCTGCAGTTCCGGGAGCAGGAGGTACGGAACCAGGGCCAGGCGAGGACCAACTCCACCTCCGATTACCGAGAGGATGGGATGGATCTAGGCAGTGACGCCGGCAGCAGCAGCAGCAGCAGCCGCGCCAGTTCACAGTCCAACTCCACCAAAGTGACCCCTTGCTCCGAGTGCAAATCTTCATCGTCGCCGGGGGGCAGCCTGGACTTGGTGTCTGCCCTGGAGGACTATGAGGAGCCCTTCCCGGTCTACCAGAAGAAGGTGATTGATGAGTGGGCGCCGGAGGAGGACGGGGAGGAGGAGGAAGAGGAGGACGAGCGCGACCAGCGAGGGTACCGGGATGACCGCTCTCCGGCCCGGGAACCGGGGGACGTAAGCGCCAGGACCCGCAGCGGCGGCGGCGGGGGCAGGAGCGCCACCACCGCCATGCCGCCCCCGGTGCCCAACGGCAACCTCCACCAGCACGACCCCCAGGACCTCAGGCACAATGGCAACGTGGTGGTGGCTGGCCGGCCGAGCTGTTCCCGGGGCCCCCGCCGGGCGATCCAAAAGCCCCAGCCGGCTGGGGGCCGGCGCAGTGGCCGCGGCCCGGCGGCTGGGGGGCTCTGCCTTCAGCCCCCAGACGGCGGGACGTGCGTCCCCGAAGAGCCCCCGGTGCCACCTATGGATTGGGAGGCGCTGGAGAAGCATCTGGCCGGGCTGCAGTTCCGGGAGCAGGAGGTACGGAACCAGGGCCAGGCGAGGACCAACTCCACCTCCGATTACCGAGAGGATGGG
MDLGSDAGSSSSSSRASSQSNSTKVTPCSECKSSSSPGGSLDLVSALEDYEEPFPVYQKKVIDEWAPEEDGEEEEEEDERDQRGYRDDRSPAREPGDVSARTRSGGGGGRSATTAMPPPVPNGNLHQHDPQDLRHNGNVVVAGRPSCSRGPRRAIQKPQPAGGRRSGRGPAAGGLCLQPPDGGTCVPEEPPVPPMDWEALEKHLAGLQFREQEVRNQGQARTNSTSDYREDGMDLGSDAGSSSSSSRASSQSNSTKVTPCSECKSSSSPGGSLDLVSALEDYEEPFPVYQKKVIDEWAPEEDGEEEEEEDERDQRGYRDDRSPAREPGDVSARTRSGGGGGRSATTAMPPPVPNGNLHQHDPQDLRHNGNVVVAGRPSCSRGPRRAIQKPQPAGGRRSGRGPAAGGLCLQPPDGGTCVPEEPPVPPMDWEALEKHLAGLQFREQEVRNQGQARTNSTSDYREDGMDLGSDAGSSSSSSRASSQSNSTKVTPCSECKSSSSPGGSLDLVSALEDYEEPFPVYQKKVIDEWAPEEDGEEEEEEDERDQRGYRDDRSPAREPGDVSARTRSGGGGGRSATTAMPPPVPNGNLHQHDPQDLRHNGNVVVAGRPSCSRGPRRAIQKPQPAGGRRSGRGPAAGGLCLQPPDGGTCVPEEPPVPPMDWEALEKHLAGLQFREQEVRNQGQARTNSTSDYREDG