TransCirc

CircID: TC-hsa-ITGA3_0001

CircRNA information

Taxonomy:

Homo sapiens

Genome Version:

hg38

Location:

chr17:50056197~50056368

Gene:

ITGA3

Gene type:

protein_coding

Strand:

exons:

ORFS:

Xref:

circAtlas: hsa-ITGA3_0025

Evidences

Ribosome/polysome profiling	0.0	Evidence score: 1.728086 MS Q-Value:
ORF	1.0
IRES sequence	0.11323
Translation initiation site	0.0
SeqComp	0.61486
m6A sites	0.0
MS evidence	0.0

Other evidences Upload

File	Author	Date

Structure

IRES

m6A

TIS

circRNA sequence

GGACGGCGGCGACCCGGCCGCTGGGGAGGCAGGAAGATAGACCCACGGATCTTAGGAAGGGATCCGAGAGCGCAGCTGTGAAACTGGCTGGGGCTGGGGGCACGAAACCGATCAGCGCTACGGAGCGCAGCGGCCGGCGGGTTCCAGTGTCCTCCGGCGGCGCGGGGAGCAG

Exons

exon1:50056197~50056368

IRES sequence

50056230~50056235
50056299~50056304

circRNA specific ORFs

Attribute

ORF struct

circRNA sequence

Amino acid sequence

MS evidence

Start: 88
Stop: 40
Length: 297
Translation cycles: 2

CTGGGGCTGGGGGCACGAAACCGATCAGCGCTACGGAGCGCAGCGGCCGGCGGGTTCCAGTGTCCTCCGGCGGCGCGGGGAGCAGGGACGGCGGCGACCCGGCCGCTGGGGAGGCAGGAAGATAGACCCACGGATCTTAGGAAGGGATCCGAGAGCGCAGCTGTGAAACTGGCTGGGGCTGGGGGCACGAAACCGATCAGCGCTACGGAGCGCAGCGGCCGGCGGGTTCCAGTGTCCTCCGGCGGCGCGGGGAGCAGGGACGGCGGCGACCCGGCCGCTGGGGAGGCAGGAAGATAG

LGLGARNRSALRSAAAGGFQCPPAARGAGTAATRPLGRQEDRPTDLRKGSESAAVKLAGAGGTKPISATERSGRRVPVSSGGAGSRDGGDPAAGEAGR*

Start: 21
Stop: 40
Length: 192
Translation cycles: 1

CTGGGGAGGCAGGAAGATAGACCCACGGATCTTAGGAAGGGATCCGAGAGCGCAGCTGTGAAACTGGCTGGGGCTGGGGGCACGAAACCGATCAGCGCTACGGAGCGCAGCGGCCGGCGGGTTCCAGTGTCCTCCGGCGGCGCGGGGAGCAGGGACGGCGGCGACCCGGCCGCTGGGGAGGCAGGAAGATAG

LGRQEDRPTDLRKGSESAAVKLAGAGGTKPISATERSGRRVPVSSGGAGSRDGGDPAAGEAGR*