TransCirc

CircID: TC-hsa-PCDH15_0003

CircRNA information

Taxonomy:

Homo sapiens

Genome Version:

hg38

Location:

chr10:54317271~54388693

Gene:

PCDH15

Gene type:

protein_coding

Strand:

exons:

ORFS:

Xref:

circAtlas: hsa-PCDH15_0080

Evidences

Ribosome/polysome profiling	0.0	Evidence score: 1.817769 MS Q-Value:
ORF	1.0
IRES sequence	0.0173
Translation initiation site	0.0
SeqComp	0.80047
m6A sites	0.0
MS evidence	0.0

Other evidences Upload

File	Author	Date

Structure

IRES

m6A

TIS

circRNA sequence

GTACAATTCTGGTGGACAACATGCTGATCAAAGGGACTGCTGGAGGACCAGACCCCACCATAGAACTTTCTTTAAAGGATAATGTGGATTACTGGGTGTTGATGGATCCTGTTAAGCAAATGCTTTT

Exons

exon1:54378942~54378816

IRES sequence

54378872~54378867

circRNA specific ORFs

Attribute

ORF struct

circRNA sequence

Amino acid sequence

MS evidence

Start: 109
Stop: 82
Length: 228
Translation cycles: 2

CTGTTAAGCAAATGCTTTTGTACAATTCTGGTGGACAACATGCTGATCAAAGGGACTGCTGGAGGACCAGACCCCACCATAGAACTTTCTTTAAAGGATAATGTGGATTACTGGGTGTTGATGGATCCTGTTAAGCAAATGCTTTTGTACAATTCTGGTGGACAACATGCTGATCAAAGGGACTGCTGGAGGACCAGACCCCACCATAGAACTTTCTTTAAAGGATAA

LLSKCFCTILVDNMLIKGTAGGPDPTIELSLKDNVDYWVLMDPVKQMLLYNSGGQHADQRDCWRTRPHHRTFFKG*

Start: 21
Stop: 82
Length: 189
Translation cycles: 1

ATGCTGATCAAAGGGACTGCTGGAGGACCAGACCCCACCATAGAACTTTCTTTAAAGGATAATGTGGATTACTGGGTGTTGATGGATCCTGTTAAGCAAATGCTTTTGTACAATTCTGGTGGACAACATGCTGATCAAAGGGACTGCTGGAGGACCAGACCCCACCATAGAACTTTCTTTAAAGGATAA

MLIKGTAGGPDPTIELSLKDNVDYWVLMDPVKQMLLYNSGGQHADQRDCWRTRPHHRTFFKG*