TransCirc

CircID: TC-hsa-PCGF3_0022

CircRNA information

Taxonomy:

Homo sapiens

Genome Version:

hg38

Location:

chr4:743474~765064

Gene:

PCGF3

Gene type:

protein_coding

Strand:

exons:

ORFS:

Xref:

circAtlas: hsa-PCGF3_0026
circpedia2: HSA_CIRCpedia_123777

Evidences

Ribosome/polysome profiling	0.0	Evidence score: 3.090071 MS Q-Value:
ORF	1.0
IRES sequence	0.29112
Translation initiation site	0.0
SeqComp	0.79895
m6A sites	1.0
MS evidence	0.0

Other evidences Upload

File	Author	Date

Structure

IRES

m6A

TIS

circRNA sequence

CGGAAATGAGAAAGCAGAGGGAGTTCTATCACAAATTGGGCATGGAGGTGCCGGGAGACATCAAGGGGGAGACCTGCTCTGCAAAACAGCACTTAGATTCCCATCGGAATGGTGAAACCAAAGCAGACGACAGTTCAAACAAAGAGGCCGCGGAGGAGAAGCCGGAGGAGGACAACGACTACCACCGCAGCGACGAGCAGGTGAGCATCTGCCTGGAGTGTAACAGCAGCAAACTGCGCGGGCTGAAGCGGAAGTGGATCCGCTGCTCAGCCCAGGCGACCGTCTTGCATCTGAAGAAGTTCATCGCCAAAAAACTCAACCTTTCATCCTTTAACGAGCTGGACATTTTATGCAACGAGGAGATCCTGGGCAAGGACCACACACTCAAGTTCGTGGTTGTCACTAGGTGGAGATTCAAG

Exons

exon1:743474~743584
exon2:744600~744688
exon3:761279~761416
exon4:764984~765064

m6A sites

761301
761311
761357

IRES sequence

743533~743538
743567~743572
744625~744630
761371~761377
761386~761392
765004~765009
765054~765059
765060~743474

circRNA specific ORFs

Attribute

ORF struct

circRNA sequence

Amino acid sequence

MS evidence

Start: 397
Stop: 115
Length: 138
Translation cycles: 1

TTGTCACTAGGTGGAGATTCAAGCGGAAATGAGAAAGCAGAGGGAGTTCTATCACAAATTGGGCATGGAGGTGCCGGGAGACATCAAGGGGGAGACCTGCTCTGCAAAACAGCACTTAGATTCCCATCGGAATGGTGA

LSLGGDSSGNEKAEGVLSQIGHGGAGRHQGGDLLCKTALRFPSEW*

Start: 407
Stop: 9
Length: 441
Translation cycles: 2

GTGGAGATTCAAGCGGAAATGAGAAAGCAGAGGGAGTTCTATCACAAATTGGGCATGGAGGTGCCGGGAGACATCAAGGGGGAGACCTGCTCTGCAAAACAGCACTTAGATTCCCATCGGAATGGTGAAACCAAAGCAGACGACAGTTCAAACAAAGAGGCCGCGGAGGAGAAGCCGGAGGAGGACAACGACTACCACCGCAGCGACGAGCAGGTGAGCATCTGCCTGGAGTGTAACAGCAGCAAACTGCGCGGGCTGAAGCGGAAGTGGATCCGCTGCTCAGCCCAGGCGACCGTCTTGCATCTGAAGAAGTTCATCGCCAAAAAACTCAACCTTTCATCCTTTAACGAGCTGGACATTTTATGCAACGAGGAGATCCTGGGCAAGGACCACACACTCAAGTTCGTGGTTGTCACTAGGTGGAGATTCAAGCGGAAATGA

VEIQAEMRKQREFYHKLGMEVPGDIKGETCSAKQHLDSHRNGETKADDSSNKEAAEEKPEEDNDYHRSDEQVSICLECNSSKLRGLKRKWIRCSAQATVLHLKKFIAKKLNLSSFNELDILCNEEILGKDHTLKFVVVTRWRFKRK*

Start: 6
Stop: 9
Length: 423
Translation cycles: 1

ATGAGAAAGCAGAGGGAGTTCTATCACAAATTGGGCATGGAGGTGCCGGGAGACATCAAGGGGGAGACCTGCTCTGCAAAACAGCACTTAGATTCCCATCGGAATGGTGAAACCAAAGCAGACGACAGTTCAAACAAAGAGGCCGCGGAGGAGAAGCCGGAGGAGGACAACGACTACCACCGCAGCGACGAGCAGGTGAGCATCTGCCTGGAGTGTAACAGCAGCAAACTGCGCGGGCTGAAGCGGAAGTGGATCCGCTGCTCAGCCCAGGCGACCGTCTTGCATCTGAAGAAGTTCATCGCCAAAAAACTCAACCTTTCATCCTTTAACGAGCTGGACATTTTATGCAACGAGGAGATCCTGGGCAAGGACCACACACTCAAGTTCGTGGTTGTCACTAGGTGGAGATTCAAGCGGAAATGA

MRKQREFYHKLGMEVPGDIKGETCSAKQHLDSHRNGETKADDSSNKEAAEEKPEEDNDYHRSDEQVSICLECNSSKLRGLKRKWIRCSAQATVLHLKKFIAKKLNLSSFNELDILCNEEILGKDHTLKFVVVTRWRFKRK*