CircID: TC-hsa-PKP4_0001
CircRNA information
Taxonomy:
Genome Version:
hg38
Location:
chr2:158457153~158621421
Xref:
Evidences
| Ribosome/polysome profiling | 0.0 |
Evidence score: 2.046839
MS Q-Value:
|
| ORF | 1.0 | |
| IRES sequence | 0.23807 | |
| Translation initiation site | 0.0 | |
| SeqComp | 0.80877 | |
| m6A sites | 0.0 | |
| MS evidence | 0.0 |
Other evidences Upload
| File | Author | Date |
|---|
Structure
IRES
m6A
TIS
circRNA sequence
CGGCGACCCCTCGGCGCCGATGTCCCTGATCCCTGGAGCGACGACGGCCGCTGCCTAAGCTGGAAAGAGGAATGCCAGCTCCTGAGCAGGCCTCATTGGTGGAGGAGGGGCAACCACAGACCCGCCAGGAAGCTGCCTCCACTGGCCCAGGCATGGAACCCGAGACCACAGCCACCACTATTCTAGCATCCGTGAAGGAGCAGGAGCTTCAGTTTCAGCGACTCACCCGAGAACTGGAAGTGGAAAGGCAGATTGTTGCCAGTCAGCTAGAAAGATGTAGGCTTGGAGCAGAATCACCAAGCATCGCCAGCACCAGCTCAACTGAGAAGTCATTTCCTTGGAGATCAACAGACGTGCCAAATACTGGTGTAAGCAAACCTAGAGTTTCTGACGCTGTCCAGCCCAACAACTATCTCATCAGGACAGAGCCAGAACAAGGAACCCTCTATTCACCAGAACAGACATCTCTCCATGAAAGTGAGGGATCATTGGGTAACTCAAGAAGTTCAACACAAATGAATTCTTATTCCGACAGTGGATACCAGGAAGCAGGGAGTTTCCACAACAGCCAGAACGTGAGCAAGGCAGACAACAGACAGCAGCATTCATTCATAGGATCAACTAACAACCATGTGGTGAGGAATTCAAGAGCTGAAGGACAAACACTGGTTCAG
Exons
- exon1:158457153~158457218
- exon2:158533180~158533316
- exon3:158577271~158577383
- exon4:158603070~158603104
- exon5:158620990~158621121
- exon6:158621231~158621421
IRES sequence
- 158603073~158603078
- 158603093~158603098
- 158620997~158621004
- 158621247~158621252
- 158621389~158621394
circRNA specific ORFs
Attribute
ORF struct
circRNA sequence
Amino acid sequence
MS evidence
- Start: 652
- Stop: 58
- Length: 81
- Translation cycles: 1
- Start: 72
- Stop: 186
- Length: 789
- Translation cycles: 1
ATGCCAGCTCCTGAGCAGGCCTCATTGGTGGAGGAGGGGCAACCACAGACCCGCCAGGAAGCTGCCTCCACTGGCCCAGGCATGGAACCCGAGACCACAGCCACCACTATTCTAGCATCCGTGAAGGAGCAGGAGCTTCAGTTTCAGCGACTCACCCGAGAACTGGAAGTGGAAAGGCAGATTGTTGCCAGTCAGCTAGAAAGATGTAGGCTTGGAGCAGAATCACCAAGCATCGCCAGCACCAGCTCAACTGAGAAGTCATTTCCTTGGAGATCAACAGACGTGCCAAATACTGGTGTAAGCAAACCTAGAGTTTCTGACGCTGTCCAGCCCAACAACTATCTCATCAGGACAGAGCCAGAACAAGGAACCCTCTATTCACCAGAACAGACATCTCTCCATGAAAGTGAGGGATCATTGGGTAACTCAAGAAGTTCAACACAAATGAATTCTTATTCCGACAGTGGATACCAGGAAGCAGGGAGTTTCCACAACAGCCAGAACGTGAGCAAGGCAGACAACAGACAGCAGCATTCATTCATAGGATCAACTAACAACCATGTGGTGAGGAATTCAAGAGCTGAAGGACAAACACTGGTTCAGCGGCGACCCCTCGGCGCCGATGTCCCTGATCCCTGGAGCGACGACGGCCGCTGCCTAAGCTGGAAAGAGGAATGCCAGCTCCTGAGCAGGCCTCATTGGTGGAGGAGGGGCAACCACAGACCCGCCAGGAAGCTGCCTCCACTGGCCCAGGCATGGAACCCGAGACCACAGCCACCACTATTCTAG