TransCirc

CircID: TC-hsa-PKP4_0009

CircRNA information

Taxonomy:

Homo sapiens

Genome Version:

hg38

Location:

chr2:158475462~158577383

Gene:

PKP4

Gene type:

protein_coding

Strand:

exons:

ORFS:

Xref:

circAtlas: hsa-PKP4_0102

Evidences

Ribosome/polysome profiling	0.0	Evidence score: 1.947849 MS Q-Value:
ORF	1.0
Translation initiation site	0.0
IRES sequence	0.0
SeqComp	0.94785
m6A sites	0.0
MS evidence	0.0

Other evidences Upload

File	Author	Date

Structure

IRES

m6A

TIS

circRNA sequence

GAGGAATGCCAGCTCCTGAGCAGGCCTCATTGGTGGAGGAGGGGCAACCACAGACCCGCCAGGAAGCTGCCTCCACTGGCCCAGGCATGGAACCCGAGACCACAGCCACCACTATTCTAGCATCCGTGAAGGAGCAGGAGCTTCAGTTTCAGCGACTCACCCGAGAACTGGAAGTGGAAAGGCAGATTGTTGCCAGTCAGCTAGAAAGATGTAGGCTTGGAGCAGAATCACCAAGCATCGCCAGCACCAG

Exons

exon1:158533180~158533316
exon2:158577271~158577383

circRNA specific ORFs

Attribute

ORF struct

circRNA sequence

Amino acid sequence

MS evidence

Start: 217
Stop: 19
Length: 303
Translation cycles: 2

TTGGAGCAGAATCACCAAGCATCGCCAGCACCAGGAGGAATGCCAGCTCCTGAGCAGGCCTCATTGGTGGAGGAGGGGCAACCACAGACCCGCCAGGAAGCTGCCTCCACTGGCCCAGGCATGGAACCCGAGACCACAGCCACCACTATTCTAGCATCCGTGAAGGAGCAGGAGCTTCAGTTTCAGCGACTCACCCGAGAACTGGAAGTGGAAAGGCAGATTGTTGCCAGTCAGCTAGAAAGATGTAGGCTTGGAGCAGAATCACCAAGCATCGCCAGCACCAGGAGGAATGCCAGCTCCTGA

LEQNHQASPAPGGMPAPEQASLVEEGQPQTRQEAASTGPGMEPETTATTILASVKEQELQFQRLTRELEVERQIVASQLERCRLGAESPSIASTRRNASS*

Start: 6
Stop: 19
Length: 264
Translation cycles: 1

ATGCCAGCTCCTGAGCAGGCCTCATTGGTGGAGGAGGGGCAACCACAGACCCGCCAGGAAGCTGCCTCCACTGGCCCAGGCATGGAACCCGAGACCACAGCCACCACTATTCTAGCATCCGTGAAGGAGCAGGAGCTTCAGTTTCAGCGACTCACCCGAGAACTGGAAGTGGAAAGGCAGATTGTTGCCAGTCAGCTAGAAAGATGTAGGCTTGGAGCAGAATCACCAAGCATCGCCAGCACCAGGAGGAATGCCAGCTCCTGA

MPAPEQASLVEEGQPQTRQEAASTGPGMEPETTATTILASVKEQELQFQRLTRELEVERQIVASQLERCRLGAESPSIASTRRNASS*