CircID: TC-hsa-PPP1R13L_0005
CircRNA information
Taxonomy:
Genome Version:
hg38
Location:
chr19:45398005~45398339
Xref:
circAtlas: hsa-PPP1R13L_0002
circBase: hsa_circ_0008615
circRNADb: hsa_circ_31061
deepbase2: hsa-circRNA12242-1
circpedia2: HSA_CIRCpedia_26169
circBase: hsa_circ_0008615
circRNADb: hsa_circ_31061
deepbase2: hsa-circRNA12242-1
circpedia2: HSA_CIRCpedia_26169
Evidences
| Ribosome/polysome profiling | 0.33333 |
Evidence score: 2.148937
MS Q-Value:
|
| ORF | 1.0 | |
| IRES sequence | 0.01763 | |
| Translation initiation site | 0.0 | |
| SeqComp | 0.79797 | |
| m6A sites | 0.0 | |
| MS evidence | 0.0 |
Other evidences Upload
| File | Author | Date |
|---|
Structure
IRES
m6A
TIS
circRNA sequence
GCGCCCGCTCCGGCCGGCACCATGGACAGCGAGGCATTCCAGAGCGCGCGGGACTTTCTGGACATGAACTTCCAGTCGCTGGCCATGAAACACATGGATCTGAAGCAGATGGAGCTGGACACGGCGGCGGCCAAGGTGGATGAACTGACCAAGCAGCTGGAGTCGCTGTGGTCAGACTCTCCCGCGCCTCCTGGCCCGCAGGCCGGACCCCCTTCTAGG
Exons
- exon1:45398339~45398264
- exon2:45398147~45398005
IRES sequence
- 45398081~45398076
circRNA specific ORFs
Attribute
ORF struct
circRNA sequence
Amino acid sequence
MS evidence
- Start: 22
- Stop: 21
- Length: 657
- Translation cycles: 3
ATGGACAGCGAGGCATTCCAGAGCGCGCGGGACTTTCTGGACATGAACTTCCAGTCGCTGGCCATGAAACACATGGATCTGAAGCAGATGGAGCTGGACACGGCGGCGGCCAAGGTGGATGAACTGACCAAGCAGCTGGAGTCGCTGTGGTCAGACTCTCCCGCGCCTCCTGGCCCGCAGGCCGGACCCCCTTCTAGGGCGCCCGCTCCGGCCGGCACCATGGACAGCGAGGCATTCCAGAGCGCGCGGGACTTTCTGGACATGAACTTCCAGTCGCTGGCCATGAAACACATGGATCTGAAGCAGATGGAGCTGGACACGGCGGCGGCCAAGGTGGATGAACTGACCAAGCAGCTGGAGTCGCTGTGGTCAGACTCTCCCGCGCCTCCTGGCCCGCAGGCCGGACCCCCTTCTAGGGCGCCCGCTCCGGCCGGCACCATGGACAGCGAGGCATTCCAGAGCGCGCGGGACTTTCTGGACATGAACTTCCAGTCGCTGGCCATGAAACACATGGATCTGAAGCAGATGGAGCTGGACACGGCGGCGGCCAAGGTGGATGAACTGACCAAGCAGCTGGAGTCGCTGTGGTCAGACTCTCCCGCGCCTCCTGGCCCGCAGGCCGGACCCCCTTCTAGGGCGCCCGCTCCGGCCGGCACC