CircRNA information
Taxonomy:
Genome Version:
hg38
Location:
chr1:3177365~3244137
Gene:
Gene type:
protein_coding
Strand:
+
exons:
ORFS:
Evidences
Ribosome/polysome profiling
|
0.0 |
Evidence score: 2.93316
MS Q-Value:
|
ORF
|
1.0 |
IRES sequence
|
0.26452 |
Translation initiation site
|
0.0 |
SeqComp
|
0.66864 |
m6A sites
|
1.0 |
MS evidence
|
0.0 |
circRNA sequence
GTGACGGTGACGTTGTAAATAATATGTATGAGCCCAACCGGGACCTGCTGGCCAGCCACAGCGCGGAGGACGAGGCCGAGGACAGTGCCATGTCGCCCATCCCCGTGGGGCCACCGTCCCCCTTCCCCACCAGCGAGGACTTCACCCCCAAGGAGGGCTCGCCGTACGAGGCCCCTGTCTACATTCCTGAAGACATTCCGATCCCAGCAGACTTCGAGCTCCGAGAGTCCTCCATCCCAGGGGCTGGCCTGGGGGTCTGGGCCAAGAGGAAGATGGAAGCCGGGGAGAGGCTGGGCCCCTGCGTGGTGGTGCCCCGGGCGGCGGCAAAGGAGACAGACTTCGGATGGGAGCAAATACTGACGGACGTGGAAGTGTCGCCCCAGGAAGGCTGCATCACAAAG
Exons
- exon1:3186125~3186474
- exon2:3244087~3244137
m6A sites
- 3186161
- 3186167
- 3186194
- 3186206
- 3186263
- 3186317
- 3186335
- 3186457
- 3186461
IRES sequence
- 3186140~3186149
- 3244088~3244095
circRNA specific ORFs
Attribute
ORF struct
circRNA sequence
Amino acid sequence
MS evidence
- Start: 344
- Stop: 18
- Length: 477
- Translation cycles: 2
ATGGGAGCAAATACTGACGGACGTGGAAGTGTCGCCCCAGGAAGGCTGCATCACAAAGGTGACGGTGACGTTGTAAATAATATGTATGAGCCCAACCGGGACCTGCTGGCCAGCCACAGCGCGGAGGACGAGGCCGAGGACAGTGCCATGTCGCCCATCCCCGTGGGGCCACCGTCCCCCTTCCCCACCAGCGAGGACTTCACCCCCAAGGAGGGCTCGCCGTACGAGGCCCCTGTCTACATTCCTGAAGACATTCCGATCCCAGCAGACTTCGAGCTCCGAGAGTCCTCCATCCCAGGGGCTGGCCTGGGGGTCTGGGCCAAGAGGAAGATGGAAGCCGGGGAGAGGCTGGGCCCCTGCGTGGTGGTGCCCCGGGCGGCGGCAAAGGAGACAGACTTCGGATGGGAGCAAATACTGACGGACGTGGAAGTGTCGCCCCAGGAAGGCTGCATCACAAAGGTGACGGTGACGTTGTAA
MGANTDGRGSVAPGRLHHKGDGDVVNNMYEPNRDLLASHSAEDEAEDSAMSPIPVGPPSPFPTSEDFTPKEGSPYEAPVYIPEDIPIPADFELRESSIPGAGLGVWAKRKMEAGERLGPCVVVPRAAAKETDFGWEQILTDVEVSPQEGCITKVTVTL*
- Start: 24
- Stop: 18
- Length: 396
- Translation cycles: 1
ATGTATGAGCCCAACCGGGACCTGCTGGCCAGCCACAGCGCGGAGGACGAGGCCGAGGACAGTGCCATGTCGCCCATCCCCGTGGGGCCACCGTCCCCCTTCCCCACCAGCGAGGACTTCACCCCCAAGGAGGGCTCGCCGTACGAGGCCCCTGTCTACATTCCTGAAGACATTCCGATCCCAGCAGACTTCGAGCTCCGAGAGTCCTCCATCCCAGGGGCTGGCCTGGGGGTCTGGGCCAAGAGGAAGATGGAAGCCGGGGAGAGGCTGGGCCCCTGCGTGGTGGTGCCCCGGGCGGCGGCAAAGGAGACAGACTTCGGATGGGAGCAAATACTGACGGACGTGGAAGTGTCGCCCCAGGAAGGCTGCATCACAAAGGTGACGGTGACGTTGTAA
MYEPNRDLLASHSAEDEAEDSAMSPIPVGPPSPFPTSEDFTPKEGSPYEAPVYIPEDIPIPADFELRESSIPGAGLGVWAKRKMEAGERLGPCVVVPRAAAKETDFGWEQILTDVEVSPQEGCITKVTVTL*