CircID: TC-hsa-PRDM16_0005
CircRNA information
Taxonomy:
Genome Version:
hg38
Location:
chr1:3186125~3244137
Xref:
Evidences
| Ribosome/polysome profiling | 0.0 |
Evidence score: 2.93316
MS Q-Value:
|
| ORF | 1.0 | |
| IRES sequence | 0.26452 | |
| Translation initiation site | 0.0 | |
| SeqComp | 0.66864 | |
| m6A sites | 1.0 | |
| MS evidence | 0.0 |
Other evidences Upload
| File | Author | Date |
|---|
Structure
IRES
m6A
TIS
circRNA sequence
GTGACGGTGACGTTGTAAATAATATGTATGAGCCCAACCGGGACCTGCTGGCCAGCCACAGCGCGGAGGACGAGGCCGAGGACAGTGCCATGTCGCCCATCCCCGTGGGGCCACCGTCCCCCTTCCCCACCAGCGAGGACTTCACCCCCAAGGAGGGCTCGCCGTACGAGGCCCCTGTCTACATTCCTGAAGACATTCCGATCCCAGCAGACTTCGAGCTCCGAGAGTCCTCCATCCCAGGGGCTGGCCTGGGGGTCTGGGCCAAGAGGAAGATGGAAGCCGGGGAGAGGCTGGGCCCCTGCGTGGTGGTGCCCCGGGCGGCGGCAAAGGAGACAGACTTCGGATGGGAGCAAATACTGACGGACGTGGAAGTGTCGCCCCAGGAAGGCTGCATCACAAAG
Exons
- exon1:3186125~3186474
- exon2:3244087~3244137
m6A sites
- 3186161
- 3186167
- 3186194
- 3186206
- 3186263
- 3186317
- 3186335
- 3186457
- 3186461
IRES sequence
- 3186140~3186149
- 3244088~3244095
circRNA specific ORFs
Attribute
ORF struct
circRNA sequence
Amino acid sequence
MS evidence
- Start: 344
- Stop: 18
- Length: 477
- Translation cycles: 2
ATGGGAGCAAATACTGACGGACGTGGAAGTGTCGCCCCAGGAAGGCTGCATCACAAAGGTGACGGTGACGTTGTAAATAATATGTATGAGCCCAACCGGGACCTGCTGGCCAGCCACAGCGCGGAGGACGAGGCCGAGGACAGTGCCATGTCGCCCATCCCCGTGGGGCCACCGTCCCCCTTCCCCACCAGCGAGGACTTCACCCCCAAGGAGGGCTCGCCGTACGAGGCCCCTGTCTACATTCCTGAAGACATTCCGATCCCAGCAGACTTCGAGCTCCGAGAGTCCTCCATCCCAGGGGCTGGCCTGGGGGTCTGGGCCAAGAGGAAGATGGAAGCCGGGGAGAGGCTGGGCCCCTGCGTGGTGGTGCCCCGGGCGGCGGCAAAGGAGACAGACTTCGGATGGGAGCAAATACTGACGGACGTGGAAGTGTCGCCCCAGGAAGGCTGCATCACAAAGGTGACGGTGACGTTGTAA
- Start: 24
- Stop: 18
- Length: 396
- Translation cycles: 1
ATGTATGAGCCCAACCGGGACCTGCTGGCCAGCCACAGCGCGGAGGACGAGGCCGAGGACAGTGCCATGTCGCCCATCCCCGTGGGGCCACCGTCCCCCTTCCCCACCAGCGAGGACTTCACCCCCAAGGAGGGCTCGCCGTACGAGGCCCCTGTCTACATTCCTGAAGACATTCCGATCCCAGCAGACTTCGAGCTCCGAGAGTCCTCCATCCCAGGGGCTGGCCTGGGGGTCTGGGCCAAGAGGAAGATGGAAGCCGGGGAGAGGCTGGGCCCCTGCGTGGTGGTGCCCCGGGCGGCGGCAAAGGAGACAGACTTCGGATGGGAGCAAATACTGACGGACGTGGAAGTGTCGCCCCAGGAAGGCTGCATCACAAAGGTGACGGTGACGTTGTAA