CircRNA information
Taxonomy:
Genome Version:
hg38
Location:
chr1:1734447~1735998
Gene:
Gene type:
transcribed_processed_pseudogene
Strand:
-
exons:
ORFS:
Evidences
Ribosome/polysome profiling
|
0.0 |
Evidence score: 3.047404
MS Q-Value:
|
ORF
|
1.0 |
IRES sequence
|
0.3347 |
Translation initiation site
|
0.0 |
SeqComp
|
0.71271 |
m6A sites
|
1.0 |
MS evidence
|
0.0 |
circRNA sequence
CTCCTGACCTCGTGATCTTCCCGCCTCAGCTCCCCACAGTGCTGGGATTCCAGGCGTGAGCTGCTGTACCTGCCCATGATAACTTTCTCACCACCACCAACTTCAGTTTCCCTCGCTGCTGTAATAATCAGTTCCCTGAGCTGGGCCTTGAGGTCCGAGTTCATCTCCAGCTCCAGAAGAATCTAAGAAGGCAAGAACACCAGGGTCAACCCTCAGTGCGTGTATGAGCACCCCCAGCCTCATTTTTGTGTTTTCTATAGAGATGGGGTCTCGCTGTGTTGCCCATGCTGGTCCTGAACTCCTTATCTCAAGTGATCCTCCTGCCTCGGCCTCCTAAAGTGCTGGGATTACAGCCATCAGCCGCCGTGTCCGGCTTTAAAAAGCAATCCTAAAAATCGTAAACAAAATGACACAGAGGAACCTTATTGCTCATCGAGCCATGCAAGAAAGGAACCGTTTATTTCCAGCAAGTTTAAAACATCGATTTGACCTCCAGCCATGGTCGATGAGATGTTAGAAAACCAACTCTCTTGCTGACAACAACGAGAAAATCTTGATACCATTTAGCAAAAAGAAGTCTGTGGGGGAGGCGTTGGAGAGTGACGGAACTGCCACGGCCTGAGGCACCCGGCTTCCGGAGCCTCTGGCAGCCCAGAGAAGTCTCTGTCTTGTCGCCCAGGCTGGGGTACAGTGGTGCCATCTCAGCTGACTGCAACCTCCGCCTCCGGGTTCAAGTGATTGTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCGCCCACCACCATGCCTGGACGTCCCAGTGATCGGGAGGAGCGGGAAGAGCTTCAGCTACAACCAGGACGTGGTGCTGCTGCTTCTGACAGACGGAGTCCTGTTCCACCTTCAGAGCGTCACGGCGTACGCCCTCATGGGGAAAATCTCCCCGGTGACTTTCAG
Exons
- exon1:1735998~1735204
- exon2:1734835~1734690
m6A sites
- 1735597
- 1735589
- 1735579
- 1735546
- 1735521
- 1735510
- 1735478
- 1735474
- 1735462
- 1735459
- 1735456
- 1735396
- 1735391
- 1735290
- 1735284
IRES sequence
- 1735877~1735871
- 1735824~1735817
- 1735815~1735809
- 1735624~1735617
- 1735609~1735603
- 1735600~1735592
- 1735527~1735518
- 1735431~1735422
circRNA specific ORFs
Attribute
ORF struct
circRNA sequence
Amino acid sequence
MS evidence
- Start: 757
- Stop: 7
- Length: 192
- Translation cycles: 1
CTGAGTAGCTGGGATTACAGGCGCCCACCACCATGCCTGGACGTCCCAGTGATCGGGAGGAGCGGGAAGAGCTTCAGCTACAACCAGGACGTGGTGCTGCTGCTTCTGACAGACGGAGTCCTGTTCCACCTTCAGAGCGTCACGGCGTACGCCCTCATGGGGAAAATCTCCCCGGTGACTTTCAGCTCCTGA
LSSWDYRRPPPCLDVPVIGRSGKSFSYNQDVVLLLLTDGVLFHLQSVTAYALMGKISPVTFSS*
- Start: 789
- Stop: 15
- Length: 168
- Translation cycles: 1
ATGCCTGGACGTCCCAGTGATCGGGAGGAGCGGGAAGAGCTTCAGCTACAACCAGGACGTGGTGCTGCTGCTTCTGACAGACGGAGTCCTGTTCCACCTTCAGAGCGTCACGGCGTACGCCCTCATGGGGAAAATCTCCCCGGTGACTTTCAGCTCCTGACCTCGTGA
MPGRPSDREEREELQLQPGRGAAASDRRSPVPPSERHGVRPHGENLPGDFQLLTS*