TransCirc

CircID: TC-hsa-RP11-115J23_0005

CircRNA information

Taxonomy:

Homo sapiens

Genome Version:

hg38

Location:

chr11:29037742~29063536

Gene:

RP11-115J23

Gene type:

lincRNA

Strand:

exons:

ORFS:

Xref:

circAtlas: hsa-RP11-115J23_0006

Evidences

Ribosome/polysome profiling	0.0	Evidence score: 3.054803 MS Q-Value:
ORF	1.0
IRES sequence	0.44328
Translation initiation site	0.0
SeqComp	0.61152
m6A sites	1.0
MS evidence	0.0

Other evidences Upload

File	Author	Date

Structure

IRES

m6A

TIS

circRNA sequence

TGACAATCCTTTGAAGTCATGAATATACAAGAGCATGAATAAGAGAAGAAAAGATGGAAGATAAAAAGCAGAAGGCACTATTCACAATAGCGAAGACATGGAATCAATCTAAATCCCCATCAATGACAGATTGGATAAAGAAAATGTGCTACATATACACAATGGAATTCTATGCAGCCATAAAAAAAGAATGAGATCGTGTCTTTTGTGGGAACCAGGATGGAGCTGGAGGTTATTATCCTTAACAAGCTAATGCAGGAACAGAAAACCAAATACTGCATGTTCTCACTTGTAAGTCAGAGCTAAATGATAAGAACTTACAAACACAAAGAGGGAAACAACAGACACTGGTGTCTACTTGAAGGGAGAAGGTGAGAAGAGAGATAGAAGCAGAAAAAATAACTACTGGGTAGTGGGCTTAATACCTGGGTGATGAAATAATATGTAAAACAAACCCCCATTACAGGTGTTTACCTATGAAACAAACCTTCACATGTACCCC

Exons

exon1:29037742~29037816
exon2:29044445~29044871

m6A sites

29044614
29044630
29044637
29044685
29044693
29044707
29044710
29044714

IRES sequence

29037761~29037771
29037777~29037795
29037799~29037808
29044471~29044476
29044480~29044485
29044504~29044509
29044520~29044528
29044549~29044561
29044640~29044647
29044679~29044685
29044705~29044710
29044744~29044749
29044750~29044755
29044763~29044771
29044788~29044793
29044805~29044813
29044817~29044822
29044849~29044854

circRNA specific ORFs

Attribute

ORF struct

circRNA sequence

Amino acid sequence

MS evidence

Start: 426
Stop: 22
Length: 99
Translation cycles: 1

CTGGGTGATGAAATAATATGTAAAACAAACCCCCATTACAGGTGTTTACCTATGAAACAAACCTTCACATGTACCCCTGACAATCCTTTGAAGTCATGA

LGDEIICKTNPHYRCLPMKQTFTCTPDNPLKS*