TransCirc

CircID: TC-hsa-RP11-146F11_0001

CircRNA information

Taxonomy:

Homo sapiens

Genome Version:

hg38

Location:

chr16:30698220~30698880

Gene:

RP11-146F11

Gene type:

antisense

Strand:

exons:

ORFS:

Xref:

circAtlas: hsa-RP11-146F11_0003

Evidences

Ribosome/polysome profiling	0.0	Evidence score: 2.621113 MS Q-Value:
ORF	1.0
IRES sequence	0.0173
Translation initiation site	0.0
SeqComp	0.60381
m6A sites	1.0
MS evidence	0.0

Other evidences Upload

File	Author	Date

Structure

IRES

m6A

TIS

circRNA sequence

GTCCTGGTCCCCCGGCTAGATGTGGTGGGCGCGCGCCCCGACTACTCGTCCCACGCCCCCCTTCCTCTTCCCGCGCGCCCCTGAGGGGTGACTGGGTTGGTGGGCGGGCAGGAGCGCACCTGGGTCCGTCCTCTCAGGGCTCGCTCGCTCGCTCGCTCGCTCAGGCACGCGTGCGCAGAAGGGCGGGAAGGGAGAGGAGACACGCCGGGGCCCAGCGCCGGCCGGCCTGACCCCCTCAGTCTGTCTCTATGGGCGCGCGCCGACAGCCTCGCGCACCGGCCCCGGGGCCCCGGCTGAGGGTGCGCGCGCAGCACCCCGGGAAGGTGGGGGGGAGGCGGTGGCGGAAAGATGCGCGCGCAGTCAGCCGTCATGGGAGGGGGAACTGTGGGGCGTTCGCCATCTTGTCTCCCTCTCCTTACCTGCGTCCTCGGGGGCGTGCGCACCACCCCCCCTCCCGCCTAGGAGGGGGGAGGGCCCCCTCTTGGCCACCGCCTTCGCGGCCTTTAAACTCCCCTGGAGACTGCGGCTACTGCCACCGCCTTGCCTCCACTGCCTCTTCGCGCAGCACACAGATGCGGACGGTGGGTGGGAAAAAGGGCAGACGCTACTCCCAGCGAACCGCCGCTGCCGCTCCCGAGGCCTCACCAAAATGGCCGCCGCC

Exons

exon1:30698880~30698220

m6A sites

30698790

IRES sequence

30698378~30698373

circRNA specific ORFs

Attribute

ORF struct

circRNA sequence

Amino acid sequence

MS evidence

Start: 514
Stop: 230
Length: 378
Translation cycles: 1

CTGGAGACTGCGGCTACTGCCACCGCCTTGCCTCCACTGCCTCTTCGCGCAGCACACAGATGCGGACGGTGGGTGGGAAAAAGGGCAGACGCTACTCCCAGCGAACCGCCGCTGCCGCTCCCGAGGCCTCACCAAAATGGCCGCCGCCGTCCTGGTCCCCCGGCTAGATGTGGTGGGCGCGCGCCCCGACTACTCGTCCCACGCCCCCCTTCCTCTTCCCGCGCGCCCCTGAGGGGTGACTGGGTTGGTGGGCGGGCAGGAGCGCACCTGGGTCCGTCCTCTCAGGGCTCGCTCGCTCGCTCGCTCGCTCAGGCACGCGTGCGCAGAAGGGCGGGAAGGGAGAGGAGACACGCCGGGGCCCAGCGCCGGCCGGCCTGA

LETAATATALPPLPLRAAHRCGRWVGKRADATPSEPPLPLPRPHQNGRRRPGPPARCGGRAPRLLVPRPPSSSRAPLRGDWVGGRAGAHLGPSSQGSLARSLAQARVRRRAGRERRHAGAQRRPA*

Start: 650
Stop: 84
Length: 96
Translation cycles: 1

ATGGCCGCCGCCGTCCTGGTCCCCCGGCTAGATGTGGTGGGCGCGCGCCCCGACTACTCGTCCCACGCCCCCCTTCCTCTTCCCGCGCGCCCCTGA

MAAAVLVPRLDVVGARPDYSSHAPLPLPARP*

Start: 249
Stop: 19
Length: 432
Translation cycles: 1

ATGGGCGCGCGCCGACAGCCTCGCGCACCGGCCCCGGGGCCCCGGCTGAGGGTGCGCGCGCAGCACCCCGGGAAGGTGGGGGGGAGGCGGTGGCGGAAAGATGCGCGCGCAGTCAGCCGTCATGGGAGGGGGAACTGTGGGGCGTTCGCCATCTTGTCTCCCTCTCCTTACCTGCGTCCTCGGGGGCGTGCGCACCACCCCCCCTCCCGCCTAGGAGGGGGGAGGGCCCCCTCTTGGCCACCGCCTTCGCGGCCTTTAAACTCCCCTGGAGACTGCGGCTACTGCCACCGCCTTGCCTCCACTGCCTCTTCGCGCAGCACACAGATGCGGACGGTGGGTGGGAAAAAGGGCAGACGCTACTCCCAGCGAACCGCCGCTGCCGCTCCCGAGGCCTCACCAAAATGGCCGCCGCCGTCCTGGTCCCCCGGCTAG

MGARRQPRAPAPGPRLRVRAQHPGKVGGRRWRKDARAVSRHGRGNCGAFAILSPSPYLRPRGRAHHPPSRLGGGRAPSWPPPSRPLNSPGDCGYCHRLASTASSRSTQMRTVGGKKGRRYSQRTAAAAPEASPKWPPPSWSPG*