TransCirc

CircID: TC-hsa-RP11-2C24_0011

CircRNA information

Taxonomy:

Homo sapiens

Genome Version:

hg38

Location:

chr16:30728966~30729572

Gene:

RP11-2C24

Gene type:

lincRNA

Strand:

exons:

ORFS:

Xref:

circAtlas: hsa-RP11-2C24_0001
circBase: hsa_circ_0006127
circRNADb: hsa_circ_11077
deepbase2: hsa-circRNA2961-17
circpedia2: HSA_CIRCpedia_17450

Evidences

Ribosome/polysome profiling	0.66667	Evidence score: 2.547628 MS Q-Value:
ORF	1.0
IRES sequence	0.01786
Translation initiation site	0.0
SeqComp	0.8631
m6A sites	0.0
MS evidence	0.0

Other evidences Upload

File	Author	Date

Structure

IRES

m6A

TIS

circRNA sequence

GACTCCCTGGAGGAAAAGCGGAAGCGGCAGCGGTCTGAACGCCTGGAACGGATTTTCCAACTTAGTGAGGCTCATGGGGCCCTGGCACCTGTGTATGGGACTGAAGTCCTGGATTTCTGTACCCTGCCCCAACCTGTTGCCAGCCCCATCGGCCCTCGTTCTCCTGGCCCCAGCCACCCCACCTTTTGGACTTATACCGAGGCTGCCCACCGGGCTGTACTGTTTCCCCAGCAGCGACTAGACCAGCTGTCAGAAATCATTGAGAGGTTCATCTTTGTCATGCCTCCTGTGGAGGCACCTCCCCCTTCCCTGCATGCCTGCCACCCACCTCCTTGGCTGGCCCCACGTCAGGCAGCCTTCCAGGAGCAATTGGCCTCTGAGCTCTGGCCCCGGGCTCGTCCTTTGCACCGTATTGTGTGTAACATGCGCACCCAGTTCCCTGACTTAAGACTCATCCAGTATGATTGCG

Exons

exon1:30728966~30729231
exon2:30729370~30729572

IRES sequence

30729549~30729554

circRNA specific ORFs

Attribute

ORF struct

circRNA sequence

Amino acid sequence

MS evidence

Start: 280
Stop: 38
Length: 228
Translation cycles: 1

ATGCCTCCTGTGGAGGCACCTCCCCCTTCCCTGCATGCCTGCCACCCACCTCCTTGGCTGGCCCCACGTCAGGCAGCCTTCCAGGAGCAATTGGCCTCTGAGCTCTGGCCCCGGGCTCGTCCTTTGCACCGTATTGTGTGTAACATGCGCACCCAGTTCCCTGACTTAAGACTCATCCAGTATGATTGCGGACTCCCTGGAGGAAAAGCGGAAGCGGCAGCGGTCTGA

MPPVEAPPPSLHACHPPPWLAPRQAAFQEQLASELWPRARPLHRIVCNMRTQFPDLRLIQYDCGLPGGKAEAAAV*

Start: 465
Stop: 241
Length: 246
Translation cycles: 1

TTGCGGACTCCCTGGAGGAAAAGCGGAAGCGGCAGCGGTCTGAACGCCTGGAACGGATTTTCCAACTTAGTGAGGCTCATGGGGCCCTGGCACCTGTGTATGGGACTGAAGTCCTGGATTTCTGTACCCTGCCCCAACCTGTTGCCAGCCCCATCGGCCCTCGTTCTCCTGGCCCCAGCCACCCCACCTTTTGGACTTATACCGAGGCTGCCCACCGGGCTGTACTGTTTCCCCAGCAGCGACTAG

LRTPWRKSGSGSGLNAWNGFSNLVRLMGPWHLCMGLKSWISVPCPNLLPAPSALVLLAPATPPFGLIPRLPTGLYCFPSSD*