TransCirc

CircID: TC-hsa-SDF4_0002

CircRNA information

Taxonomy:

Homo sapiens

Genome Version:

hg38

Location:

chr1:1223244~1223968

Gene:

SDF4

Gene type:

protein_coding

Strand:

exons:

ORFS:

Xref:

circAtlas: hsa-SDF4_0001
circBase: hsa_circ_0000002
circRNADb: hsa_circ_21644
deepbase2: hsa-circRNA8241-5
circpedia2: HSA_CIRCpedia_27442

Evidences

Ribosome/polysome profiling	0.33333	Evidence score: 2.220746 MS Q-Value:
ORF	1.0
IRES sequence	0.12697
Translation initiation site	0.0
SeqComp	0.76044
m6A sites	0.0
MS evidence	0.0

Other evidences Upload

File	Author	Date

Structure

IRES

m6A

TIS

circRNA sequence

GGTGGATGTGAACACTGACCGGAAGATCAGTGCCAAGGAGATGCAGCGCTGGATCATGGAGAAGACGGCCGAGCACTTCCAGGAGGCCATGGAGGAGAGCAAGACACACTTCCGCGCCGTGGACCCTGACGGGGACGGTCACGTGTCTTGGGACGAGTATAAGGTGAAGTTTTTGGCGAGTAAAGGCCATAGCGAGAAGGAGGTTGCCGACGCCATCAGGCTCAACGAGGAACTCAAAGTGGATGAGGAAA

Exons

exon1:1223968~1223832
exon2:1223357~1223244

IRES sequence

1223932~1223927
1223909~1223904

circRNA specific ORFs

Attribute

ORF struct

circRNA sequence

Amino acid sequence

MS evidence

Start: 41
Stop: 11
Length: 222
Translation cycles: 1

ATGCAGCGCTGGATCATGGAGAAGACGGCCGAGCACTTCCAGGAGGCCATGGAGGAGAGCAAGACACACTTCCGCGCCGTGGACCCTGACGGGGACGGTCACGTGTCTTGGGACGAGTATAAGGTGAAGTTTTTGGCGAGTAAAGGCCATAGCGAGAAGGAGGTTGCCGACGCCATCAGGCTCAACGAGGAACTCAAAGTGGATGAGGAAAGGTGGATGTGA

MQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKFLASKGHSEKEVADAIRLNEELKVDEERWM*

Start: 204
Stop: 18
Length: 66
Translation cycles: 1

TTGCCGACGCCATCAGGCTCAACGAGGAACTCAAAGTGGATGAGGAAAGGTGGATGTGAACACTGA

LPTPSGSTRNSKWMRKGGCEH*