TransCirc

CircID: TC-hsa-SEC22C_0016

CircRNA information

Taxonomy:

Homo sapiens

Genome Version:

hg38

Location:

chr3:42568865~42569073

Gene:

SEC22C

Gene type:

protein_coding

Strand:

exons:

ORFS:

Xref:

circAtlas: hsa-SEC22C_0006
circBase: hsa_circ_0064982
deepbase2: hsa-circRNA13496-4
circpedia2: HSA_CIRCpedia_45656

Evidences

Ribosome/polysome profiling	0.0	Evidence score: 1.658342 MS Q-Value:
ORF	1.0
IRES sequence	0.01906
Translation initiation site	0.0
SeqComp	0.63929
m6A sites	0.0
MS evidence	0.0

Other evidences Upload

File	Author	Date

Structure

IRES

m6A

TIS

circRNA sequence

GTGTCCTCATGACTTCTCTTGTGGACCATGTCCGTGATCTTTTTTGCCTGCGTGGTACGGGTAAGGGATGGACTGCCCCTCTCAGCCTCTACTGATTTTTACCACACCCAAGATTTTTTGGAATGGAGGAGACGGCTCAAGAGTTTAGCCTTGCGACTGGCCCAGTATCCAGGTCGAGGTTCTGCAGAAGGTTGTGACTTTAGTATACA

Exons

exon1:42569073~42568865

IRES sequence

42568870~42568865

circRNA specific ORFs

Attribute

ORF struct

circRNA sequence

Amino acid sequence

MS evidence

Start: 28
Stop: 37
Length: 219
Translation cycles: 1

ATGTCCGTGATCTTTTTTGCCTGCGTGGTACGGGTAAGGGATGGACTGCCCCTCTCAGCCTCTACTGATTTTTACCACACCCAAGATTTTTTGGAATGGAGGAGACGGCTCAAGAGTTTAGCCTTGCGACTGGCCCAGTATCCAGGTCGAGGTTCTGCAGAAGGTTGTGACTTTAGTATACAGTGTCCTCATGACTTCTCTTGTGGACCATGTCCGTGA

MSVIFFACVVRVRDGLPLSASTDFYHTQDFLEWRRRLKSLALRLAQYPGRGSAEGCDFSIQCPHDFSCGPCP*

Start: 182
Stop: 95
Length: 123
Translation cycles: 1

CTGCAGAAGGTTGTGACTTTAGTATACAGTGTCCTCATGACTTCTCTTGTGGACCATGTCCGTGATCTTTTTTGCCTGCGTGGTACGGGTAAGGGATGGACTGCCCCTCTCAGCCTCTACTGA

LQKVVTLVYSVLMTSLVDHVRDLFCLRGTGKGWTAPLSLY*