CircID: TC-hsa-SLC38A5_0005
CircRNA information
Taxonomy:
Genome Version:
hg38
Location:
chrX:48462007~48462980
Evidences
| Ribosome/polysome profiling | 0.0 |
Evidence score: 1.804395
MS Q-Value:
|
| ORF | 1.0 | |
| IRES sequence | 0.01927 | |
| Translation initiation site | 0.0 | |
| SeqComp | 0.78513 | |
| m6A sites | 0.0 | |
| MS evidence | 0.0 |
Other evidences Upload
| File | Author | Date |
|---|
Structure
IRES
m6A
TIS
circRNA sequence
GGACTGGTTCTTGAAGGGAAACCTCCTCATCATCATCGTCAGTGTGTTAATCATCCTGCCCCTCGCCCTCATGAAACACTTGGGCTACCTGGGGTACACCAGTGGTCTCTCTCTGACCTGCATGCTGTTTTTCCTTGTTTCGGTCATCTACAAGAAGTTCCAACTTGGCTGTGCTATAGGCCACAATGAAACAGCAATGGAGAGTGAAGCTCTCGTGGGACTCCCCAGCCAAGGACTCAACAGCAGCTGTGAGGCCCAGATGTTCACAGTTGACTCACAG
Exons
- exon1:48462980~48462898
- exon2:48462291~48462233
- exon3:48462144~48462007
IRES sequence
- 48462135~48462130
circRNA specific ORFs
Attribute
ORF struct
circRNA sequence
Amino acid sequence
MS evidence
- Start: 71
- Stop: 189
- Length: 399
- Translation cycles: 1
ATGAAACACTTGGGCTACCTGGGGTACACCAGTGGTCTCTCTCTGACCTGCATGCTGTTTTTCCTTGTTTCGGTCATCTACAAGAAGTTCCAACTTGGCTGTGCTATAGGCCACAATGAAACAGCAATGGAGAGTGAAGCTCTCGTGGGACTCCCCAGCCAAGGACTCAACAGCAGCTGTGAGGCCCAGATGTTCACAGTTGACTCACAGGGACTGGTTCTTGAAGGGAAACCTCCTCATCATCATCGTCAGTGTGTTAATCATCCTGCCCCTCGCCCTCATGAAACACTTGGGCTACCTGGGGTACACCAGTGGTCTCTCTCTGACCTGCATGCTGTTTTTCCTTGTTTCGGTCATCTACAAGAAGTTCCAACTTGGCTGTGCTATAGGCCACAATGA
- Start: 186
- Stop: 189
- Length: 564
- Translation cycles: 2
ATGAAACAGCAATGGAGAGTGAAGCTCTCGTGGGACTCCCCAGCCAAGGACTCAACAGCAGCTGTGAGGCCCAGATGTTCACAGTTGACTCACAGGGACTGGTTCTTGAAGGGAAACCTCCTCATCATCATCGTCAGTGTGTTAATCATCCTGCCCCTCGCCCTCATGAAACACTTGGGCTACCTGGGGTACACCAGTGGTCTCTCTCTGACCTGCATGCTGTTTTTCCTTGTTTCGGTCATCTACAAGAAGTTCCAACTTGGCTGTGCTATAGGCCACAATGAAACAGCAATGGAGAGTGAAGCTCTCGTGGGACTCCCCAGCCAAGGACTCAACAGCAGCTGTGAGGCCCAGATGTTCACAGTTGACTCACAGGGACTGGTTCTTGAAGGGAAACCTCCTCATCATCATCGTCAGTGTGTTAATCATCCTGCCCCTCGCCCTCATGAAACACTTGGGCTACCTGGGGTACACCAGTGGTCTCTCTCTGACCTGCATGCTGTTTTTCCTTGTTTCGGTCATCTACAAGAAGTTCCAACTTGGCTGTGCTATAGGCCACAATGA