CircID: TC-hsa-SLC5A11_0009
CircRNA information
Taxonomy:
Genome Version:
hg38
Location:
chr16:24875627~24877363
Xref:
circAtlas: hsa-SLC5A11_0001
circRNADb: hsa_circ_00514
deepbase2: hsa-circRNA2914-1
circpedia2: HSA_CIRCpedia_17108
circRNADb: hsa_circ_00514
deepbase2: hsa-circRNA2914-1
circpedia2: HSA_CIRCpedia_17108
Evidences
| Ribosome/polysome profiling | 0.33333 |
Evidence score: 1.973054
MS Q-Value:
|
| ORF | 1.0 | |
| IRES sequence | 0.01906 | |
| Translation initiation site | 0.0 | |
| SeqComp | 0.62066 | |
| m6A sites | 0.0 | |
| MS evidence | 0.0 |
Other evidences Upload
| File | Author | Date |
|---|
Structure
IRES
m6A
TIS
circRNA sequence
GTCACCACGATGCCAGAATACCTACGGAAGCGCTTCGGTGGCATCAGAATCCCCATCATCCTGGCTGTACTCTACCTATTTATCTACATCTTCACCAAGATCTCGGTAGACATGTATGCAGGTGCCATCTTCATCCAGCAGTCTTTGCACCTGGATCTGTACCTGGCCATAGTTGGGCTACTGGCCATCACTGCTGTATACACGGTTGCTG
Exons
- exon1:24875627~24875731
- exon2:24877258~24877363
IRES sequence
- 24877349~24877354
circRNA specific ORFs
Attribute
ORF struct
circRNA sequence
Amino acid sequence
MS evidence
- Start: 10
- Stop: 109
- Length: 522
- Translation cycles: 2
ATGCCAGAATACCTACGGAAGCGCTTCGGTGGCATCAGAATCCCCATCATCCTGGCTGTACTCTACCTATTTATCTACATCTTCACCAAGATCTCGGTAGACATGTATGCAGGTGCCATCTTCATCCAGCAGTCTTTGCACCTGGATCTGTACCTGGCCATAGTTGGGCTACTGGCCATCACTGCTGTATACACGGTTGCTGGTCACCACGATGCCAGAATACCTACGGAAGCGCTTCGGTGGCATCAGAATCCCCATCATCCTGGCTGTACTCTACCTATTTATCTACATCTTCACCAAGATCTCGGTAGACATGTATGCAGGTGCCATCTTCATCCAGCAGTCTTTGCACCTGGATCTGTACCTGGCCATAGTTGGGCTACTGGCCATCACTGCTGTATACACGGTTGCTGGTCACCACGATGCCAGAATACCTACGGAAGCGCTTCGGTGGCATCAGAATCCCCATCATCCTGGCTGTACTCTACCTATTTATCTACATCTTCACCAAGATCTCGGTAG