TransCirc

CircID: TC-hsa-SOS1_0003

CircRNA information

Taxonomy:

Homo sapiens

Genome Version:

hg38

Location:

chr2:38987473~38989314

Gene:

SOS1

Gene type:

protein_coding

Strand:

exons:

ORFS:

Xref:

circAtlas: hsa-SOS1_0029
circpedia2: HSA_CIRCpedia_366507

Evidences

Ribosome/polysome profiling	0.0	Evidence score: 1.830346 MS Q-Value:
ORF	1.0
IRES sequence	0.02035
Translation initiation site	0.0
SeqComp	0.81
m6A sites	0.0
MS evidence	0.0

Other evidences Upload

File	Author	Date

Structure

IRES

m6A

TIS

circRNA sequence

GCAATGATACCGTCTTTATCCAAGTTACTCTGCCCCATGGCCCAAGATCTGCTTCTGTATCATCTATAAGTTTAACCAAAGGCACTGATGAAGTGCCTGTCCCTCCTCCTGTTCCTCCACGAAGACGACCAGAATCTGCCCCAGCAGAATCTTCACCATCTAAG

Exons

exon1:38989314~38989270
exon2:38987591~38987473

IRES sequence

38987571~38987566

circRNA specific ORFs

Attribute

ORF struct

circRNA sequence

Amino acid sequence

MS evidence

Start: 88
Stop: 7
Length: 84
Translation cycles: 1

ATGAAGTGCCTGTCCCTCCTCCTGTTCCTCCACGAAGACGACCAGAATCTGCCCCAGCAGAATCTTCACCATCTAAGGCAATGA

MKCLSLLLFLHEDDQNLPQQNLHHLRQ*

Start: 30
Stop: 69
Length: 204
Translation cycles: 1

CTGCCCCATGGCCCAAGATCTGCTTCTGTATCATCTATAAGTTTAACCAAAGGCACTGATGAAGTGCCTGTCCCTCCTCCTGTTCCTCCACGAAGACGACCAGAATCTGCCCCAGCAGAATCTTCACCATCTAAGGCAATGATACCGTCTTTATCCAAGTTACTCTGCCCCATGGCCCAAGATCTGCTTCTGTATCATCTATAA

LPHGPRSASVSSISLTKGTDEVPVPPPVPPRRRPESAPAESSPSKAMIPSLSKLLCPMAQDLLLYHL*