CircID: TC-hsa-SPEN_0018
CircRNA information
Taxonomy:
Genome Version:
hg38
Location:
chr1:15909321~15916279
Xref:
circAtlas: hsa-SPEN_0006
circBase: hsa_circ_0010110
deepbase2: hsa-circRNA84-12
circpedia2: HSA_CIRCpedia_28501
circBase: hsa_circ_0010110
deepbase2: hsa-circRNA84-12
circpedia2: HSA_CIRCpedia_28501
Evidences
| Ribosome/polysome profiling | 0.0 |
Evidence score: 2.059538
MS Q-Value:
|
| ORF | 1.0 | |
| IRES sequence | 0.27281 | |
| Translation initiation site | 0.0 | |
| SeqComp | 0.78673 | |
| m6A sites | 0.0 | |
| MS evidence | 0.0 |
Other evidences Upload
| File | Author | Date |
|---|
Structure
IRES
m6A
TIS
circRNA sequence
CAGTGATTCCAGCAGTAGTTCAAGTGATGATTCTCCAGCTCGATCAGTTCAGTCTGCAGCAGTCCCTGCACCCACTTCCCAGTTGCTTTCATCTCTGGAAAAAGATGAGCCCCGTAAAAGTTTTGGCATCAAGGTCCAGAATCTTCCAGTACGCTCTACAGATACAAGCCTTAAAGATGGCCTTTTCCATGAATTTAAGAAATTTGGAAAAGTAACTTCAGTGCAGATACATGGAACTTCAGAAGAGAGGTATGGTCTGGTATTCTTTCGGCAGCAAGAGGACCAAGAAAAAGCCTTGACTGCATCAAAAGGAAAACTTTTCTTTGGCATGCAGATTGAAGTAACAGCATGGATAGGTCCAGAAACAGAAAGTGAAAATGAATTTCGCCCCTTGGATGAAAGGATAGATGAATTTCACCCCAAAGCAACAAGAACTCTCTTTATTGGCAACCTTGAAAAAACCACTACTTACCATGACCTTCGCAACATCTTCCAGCGCTTTGGAGAAATTGTG
Exons
- exon1:15909321~15909481
- exon2:15911101~15911301
- exon3:15916128~15916279
IRES sequence
- 15909420~15909425
- 15909448~15909453
- 15911101~15911106
- 15911131~15911140
- 15911180~15911185
- 15916221~15916226
circRNA specific ORFs
Attribute
ORF struct
circRNA sequence
Amino acid sequence
MS evidence
- Start: 329
- Stop: 6
- Length: 192
- Translation cycles: 1
- Start: 408
- Stop: 6
- Length: 627
- Translation cycles: 2
ATGAATTTCACCCCAAAGCAACAAGAACTCTCTTTATTGGCAACCTTGAAAAAACCACTACTTACCATGACCTTCGCAACATCTTCCAGCGCTTTGGAGAAATTGTGCAGTGATTCCAGCAGTAGTTCAAGTGATGATTCTCCAGCTCGATCAGTTCAGTCTGCAGCAGTCCCTGCACCCACTTCCCAGTTGCTTTCATCTCTGGAAAAAGATGAGCCCCGTAAAAGTTTTGGCATCAAGGTCCAGAATCTTCCAGTACGCTCTACAGATACAAGCCTTAAAGATGGCCTTTTCCATGAATTTAAGAAATTTGGAAAAGTAACTTCAGTGCAGATACATGGAACTTCAGAAGAGAGGTATGGTCTGGTATTCTTTCGGCAGCAAGAGGACCAAGAAAAAGCCTTGACTGCATCAAAAGGAAAACTTTTCTTTGGCATGCAGATTGAAGTAACAGCATGGATAGGTCCAGAAACAGAAAGTGAAAATGAATTTCGCCCCTTGGATGAAAGGATAGATGAATTTCACCCCAAAGCAACAAGAACTCTCTTTATTGGCAACCTTGAAAAAACCACTACTTACCATGACCTTCGCAACATCTTCCAGCGCTTTGGAGAAATTGTGCAGTGA