CircID: TC-hsa-TBCD_0107
CircRNA information
Taxonomy:
Genome Version:
hg38
Location:
chr17:82900651~82911789
Xref:
circAtlas: hsa-TBCD_0002
circBase: hsa_circ_0005245
circRNADb: hsa_circ_06172
deepbase2: hsa-circRNA3581-132
circpedia2: HSA_CIRCpedia_22969
circBase: hsa_circ_0005245
circRNADb: hsa_circ_06172
deepbase2: hsa-circRNA3581-132
circpedia2: HSA_CIRCpedia_22969
Evidences
| Ribosome/polysome profiling | 0.33333 |
Evidence score: 2.140214
MS Q-Value:
|
| ORF | 1.0 | |
| IRES sequence | 0.01906 | |
| Translation initiation site | 0.0 | |
| SeqComp | 0.78783 | |
| m6A sites | 0.0 | |
| MS evidence | 0.0 |
Other evidences Upload
| File | Author | Date |
|---|
Structure
IRES
m6A
TIS
circRNA sequence
TGTGTTTATTGCCGGCTTTCCTGAGTACACGCAGCCAATGATAGACCACCTGGTTACCATGAAGATCAGCCACTGGGATGGGGTCATCCGAGAGTTGGCTGCGAGGGCGCTGCACAACCTGGCCCAGCAGGCACCCGAGTTCAGCGCCACGCAAGTCTTCCCGAGGCTGCTGTCCATGACACTGAGTCCAGATCTTCACATGAGGCATGGGTCGATTCTCGCCTGCGCAGAAGTTGCTTACGCCTTGTACAAACTTGCAGCCCAAGAGAACAGGCCCGTCACGGACCATCTGGACGAGCAGGCAGTGCAGGGCCTGAAGCAGATTCACCAGCAGCTCTATGATCGTCAGTTATACAGGGGTCTGGGAGGACAGCTCATGAGACAAGCAG
Exons
- exon1:82900651~82900731
- exon2:82903405~82903478
- exon3:82905936~82906053
- exon4:82907761~82907821
- exon5:82909285~82909307
- exon6:82911758~82911789
IRES sequence
- 82909301~82909306
circRNA specific ORFs
Attribute
ORF struct
circRNA sequence
Amino acid sequence
MS evidence
- Start: 38
- Stop: 41
- Length: 393
- Translation cycles: 1
ATGATAGACCACCTGGTTACCATGAAGATCAGCCACTGGGATGGGGTCATCCGAGAGTTGGCTGCGAGGGCGCTGCACAACCTGGCCCAGCAGGCACCCGAGTTCAGCGCCACGCAAGTCTTCCCGAGGCTGCTGTCCATGACACTGAGTCCAGATCTTCACATGAGGCATGGGTCGATTCTCGCCTGCGCAGAAGTTGCTTACGCCTTGTACAAACTTGCAGCCCAAGAGAACAGGCCCGTCACGGACCATCTGGACGAGCAGGCAGTGCAGGGCCTGAAGCAGATTCACCAGCAGCTCTATGATCGTCAGTTATACAGGGGTCTGGGAGGACAGCTCATGAGACAAGCAGTGTGTTTATTGCCGGCTTTCCTGAGTACACGCAGCCAATGA