CircID: TC-hsa-TBCD_0112
CircRNA information
Taxonomy:
Genome Version:
hg38
Location:
chr17:82903405~82911789
Xref:
circAtlas: hsa-TBCD_0020
circBase: hsa_circ_0046573
circRNADb: hsa_circ_00435
deepbase2: hsa-circRNA3581-65
circpedia2: HSA_CIRCpedia_22973
circBase: hsa_circ_0046573
circRNADb: hsa_circ_00435
deepbase2: hsa-circRNA3581-65
circpedia2: HSA_CIRCpedia_22973
Evidences
| Ribosome/polysome profiling | 0.33333 |
Evidence score: 2.148277
MS Q-Value:
|
| ORF | 1.0 | |
| IRES sequence | 0.01906 | |
| Translation initiation site | 0.0 | |
| SeqComp | 0.79589 | |
| m6A sites | 0.0 | |
| MS evidence | 0.0 |
Other evidences Upload
| File | Author | Date |
|---|
Structure
IRES
m6A
TIS
circRNA sequence
GGTCATCCGAGAGTTGGCTGCGAGGGCGCTGCACAACCTGGCCCAGCAGGCACCCGAGTTCAGCGCCACGCAAGTCTTCCCGAGGCTGCTGTCCATGACACTGAGTCCAGATCTTCACATGAGGCATGGGTCGATTCTCGCCTGCGCAGAAGTTGCTTACGCCTTGTACAAACTTGCAGCCCAAGAGAACAGGCCCGTCACGGACCATCTGGACGAGCAGGCAGTGCAGGGCCTGAAGCAGATTCACCAGCAGCTCTATGATCGTCAGTTATACAGGGGTCTGGGAGGACAGCTCATGAGACAAGCAG
Exons
- exon1:82903405~82903478
- exon2:82905936~82906053
- exon3:82907761~82907821
- exon4:82909285~82909307
- exon5:82911758~82911789
IRES sequence
- 82909301~82909306
circRNA specific ORFs
Attribute
ORF struct
circRNA sequence
Amino acid sequence
MS evidence
- Start: 95
- Stop: 98
- Length: 312
- Translation cycles: 1
ATGACACTGAGTCCAGATCTTCACATGAGGCATGGGTCGATTCTCGCCTGCGCAGAAGTTGCTTACGCCTTGTACAAACTTGCAGCCCAAGAGAACAGGCCCGTCACGGACCATCTGGACGAGCAGGCAGTGCAGGGCCTGAAGCAGATTCACCAGCAGCTCTATGATCGTCAGTTATACAGGGGTCTGGGAGGACAGCTCATGAGACAAGCAGGGTCATCCGAGAGTTGGCTGCGAGGGCGCTGCACAACCTGGCCCAGCAGGCACCCGAGTTCAGCGCCACGCAAGTCTTCCCGAGGCTGCTGTCCATGA