TransCirc

CircID: TC-hsa-TMEM138_0004

CircRNA information

Taxonomy:

Homo sapiens

Genome Version:

hg38

Location:

chr11:61366045~61366216

Gene:

TMEM138

Gene type:

protein_coding

Strand:

exons:

ORFS:

Xref:

circAtlas: hsa-TMEM138_0005
circBase: hsa_circ_0005130
circRNADb: hsa_circ_17165
deepbase2: hsa-circRNA1346-1
circpedia2: HSA_CIRCpedia_4825

Evidences

Ribosome/polysome profiling	0.0	Evidence score: 1.895442 MS Q-Value:
ORF	1.0
IRES sequence	0.02035
Translation initiation site	0.0
SeqComp	0.87509
m6A sites	0.0
MS evidence	0.0

Other evidences Upload

File	Author	Date

Structure

IRES

m6A

TIS

circRNA sequence

CATCCAGGATATTGCAGTCCTCTTCAACATCATCATCATTTTCCTCATGTTCTTCAACACCTTCGTCTTCCAGGCTGGCCTGGTCAACCTCCTATTCCATAAGTTCAAAGGGACCATCATCCTGACAGCTGTGTACTTTGCCCTCAGCATCTCCCTTCATGTCTGGGTCATG

Exons

exon1:61366045~61366216

IRES sequence

61366143~61366148

circRNA specific ORFs

Attribute

ORF struct

circRNA sequence

Amino acid sequence

MS evidence

Start: 163
Stop: 125
Length: 135
Translation cycles: 1

CTGGGTCATGCATCCAGGATATTGCAGTCCTCTTCAACATCATCATCATTTTCCTCATGTTCTTCAACACCTTCGTCTTCCAGGCTGGCCTGGTCAACCTCCTATTCCATAAGTTCAAAGGGACCATCATCCTGA

LGHASRILQSSSTSSSFSSCSSTPSSSRLAWSTSYSISSKGPSS*

Start: 47
Stop: 102
Length: 228
Translation cycles: 1

ATGTTCTTCAACACCTTCGTCTTCCAGGCTGGCCTGGTCAACCTCCTATTCCATAAGTTCAAAGGGACCATCATCCTGACAGCTGTGTACTTTGCCCTCAGCATCTCCCTTCATGTCTGGGTCATGCATCCAGGATATTGCAGTCCTCTTCAACATCATCATCATTTTCCTCATGTTCTTCAACACCTTCGTCTTCCAGGCTGGCCTGGTCAACCTCCTATTCCATAA

MFFNTFVFQAGLVNLLFHKFKGTIILTAVYFALSISLHVWVMHPGYCSPLQHHHHFPHVLQHLRLPGWPGQPPIP*

Start: 159
Stop: 102
Length: 288
Translation cycles: 2

ATGTCTGGGTCATGCATCCAGGATATTGCAGTCCTCTTCAACATCATCATCATTTTCCTCATGTTCTTCAACACCTTCGTCTTCCAGGCTGGCCTGGTCAACCTCCTATTCCATAAGTTCAAAGGGACCATCATCCTGACAGCTGTGTACTTTGCCCTCAGCATCTCCCTTCATGTCTGGGTCATGCATCCAGGATATTGCAGTCCTCTTCAACATCATCATCATTTTCCTCATGTTCTTCAACACCTTCGTCTTCCAGGCTGGCCTGGTCAACCTCCTATTCCATAA

MSGSCIQDIAVLFNIIIIFLMFFNTFVFQAGLVNLLFHKFKGTIILTAVYFALSISLHVWVMHPGYCSPLQHHHHFPHVLQHLRLPGWPGQPPIP*