TransCirc

CircID: TC-hsa-USP48_0035

CircRNA information

Taxonomy:

Homo sapiens

Genome Version:

hg38

Location:

chr1:21701498~21703618

Gene:

USP48

Gene type:

protein_coding

Strand:

exons:

ORFS:

Xref:

circAtlas: hsa-USP48_0024
circRNADb: hsa_circ_31806
deepbase2: hsa-circRNA8352-30
circpedia2: HSA_CIRCpedia_30069

Evidences

Ribosome/polysome profiling	0.33333	Evidence score: 2.590968 MS Q-Value:
ORF	1.0
IRES sequence	0.31531
Translation initiation site	0.0
SeqComp	0.94233
m6A sites	0.0
MS evidence	0.0

Other evidences Upload

File	Author	Date

Structure

IRES

m6A

TIS

circRNA sequence

AACTCTGTCCAGAATGCAGAGAAGGCTTATTGTGTCAGCAGCAGAGGGACCTGCGTGAATACACTCAAGCCACCATCTATGTCCATAAAGTTGTGGATAATAAAAAGGTGATGAAGGATTCGGCTCCGGAACTGAATGTGAGTAGTTCTGAAACAGAGGAGGACAAGGAAGAAGCTAAACCAGATGGAGAAAAAGATCCAGATTTTAATCAA

Exons

exon1:21703618~21703512
exon2:21701602~21701498

IRES sequence

21703563~21703556
21703554~21703549
21703534~21703529
21703522~21703513
21701580~21701575
21701542~21701536
21701519~21701514
21701503~21701498

circRNA specific ORFs

Attribute

ORF struct

circRNA sequence

Amino acid sequence

MS evidence

Start: 184
Stop: 58
Length: 87
Translation cycles: 1

ATGGAGAAAAAGATCCAGATTTTAATCAAAACTCTGTCCAGAATGCAGAGAAGGCTTATTGTGTCAGCAGCAGAGGGACCTGCGTGA

MEKKIQILIKTLSRMQRRLIVSAAEGPA*

Start: 111
Stop: 111
Length: 213
Translation cycles: 1

ATGAAGGATTCGGCTCCGGAACTGAATGTGAGTAGTTCTGAAACAGAGGAGGACAAGGAAGAAGCTAAACCAGATGGAGAAAAAGATCCAGATTTTAATCAAAACTCTGTCCAGAATGCAGAGAAGGCTTATTGTGTCAGCAGCAGAGGGACCTGCGTGAATACACTCAAGCCACCATCTATGTCCATAAAGTTGTGGATAATAAAAAGGTGA

MKDSAPELNVSSSETEEDKEEAKPDGEKDPDFNQNSVQNAEKAYCVSSRGTCVNTLKPPSMSIKLWIIKR*