TransCirc

CircID: TC-hsa-VPS13D_0067

CircRNA information

Taxonomy:

Homo sapiens

Genome Version:

hg38

Location:

chr1:12299202~12308641

Gene:

VPS13D

Gene type:

protein_coding

Strand:

exons:

ORFS:

Xref:

circAtlas: hsa-VPS13D_0032
circBase: hsa_circ_0008275
circRNADb: hsa_circ_05455
deepbase2: hsa-circRNA72-10
circpedia2: HSA_CIRCpedia_27606

Evidences

Ribosome/polysome profiling	0.33333	Evidence score: 2.462964 MS Q-Value:
ORF	1.0
IRES sequence	0.34228
Translation initiation site	0.0
SeqComp	0.78735
m6A sites	0.0
MS evidence	0.0

Other evidences Upload

File	Author	Date

Structure

IRES

m6A

TIS

circRNA sequence

GTGAGAGATCAAGCCCAGCGCTGTTCACGGGTTCTCCTGGATATTGAGGCTGGTGCTCCCGTTCTCTTGATCCCAGAAAGTTCCAGATCAAATAATCTGATTGTAGCAAATTTGGGGAAGTTGAAAGTCAAAAATAAGTTTCTGTTTGCTGGTTTTCCTGGCACCTTTTCCCTACAAGATAAGGAATCTGTGCCTTCAGCTTCCCCAACGGGTATTCCCAAACACAGTCTGAGGAAAACGACAAGCACGGAGGAGCCCAGGGGAACCCATTCCCAGGGGCAGTTCACGATGCCTCTTGCTGGAATGAGCCTAGGAAGCCTGAAGAGTGAGTTTGTGCCCAGTACCTCCACCAAGCAGCAAGGGCCGCAACCCACACTGTCTGTTGGCCAAGAGTCCAGTAGTCCAGAAGACCATGTCTGCCTGCTGGATTGCGTTGTCGTGGATCTCCAGGACATGGACATCTTTGCTGCAGAGAGACATCCGAGAGAATACTCGAAGGCACCAGAGGATAGTAGTGGAGATCTGATCTTCCCTTCCTATTTTGTGCGACAGACAGGAGGAAGCCTCTTAACCGAGCCTTGTAGGCTGAAATTGCAGGTGGAAAGGAATTTGGACAA

Exons

exon1:12299202~12299384
exon2:12304506~12304728
exon3:12308431~12308641

IRES sequence

12299209~12299215
12299291~12299299
12299330~12299340
12299377~12299382
12304727~12308434
12308512~12308517
12308541~12308546
12308562~12308567

circRNA specific ORFs

Attribute

ORF struct

circRNA sequence

Amino acid sequence

MS evidence

Start: 289
Stop: 4
Length: 333
Translation cycles: 1

ATGCCTCTTGCTGGAATGAGCCTAGGAAGCCTGAAGAGTGAGTTTGTGCCCAGTACCTCCACCAAGCAGCAAGGGCCGCAACCCACACTGTCTGTTGGCCAAGAGTCCAGTAGTCCAGAAGACCATGTCTGCCTGCTGGATTGCGTTGTCGTGGATCTCCAGGACATGGACATCTTTGCTGCAGAGAGACATCCGAGAGAATACTCGAAGGCACCAGAGGATAGTAGTGGAGATCTGATCTTCCCTTCCTATTTTGTGCGACAGACAGGAGGAAGCCTCTTAACCGAGCCTTGTAGGCTGAAATTGCAGGTGGAAAGGAATTTGGACAAGTGA

MPLAGMSLGSLKSEFVPSTSTKQQGPQPTLSVGQESSSPEDHVCLLDCVVVDLQDMDIFAAERHPREYSKAPEDSSGDLIFPSYFVRQTGGSLLTEPCRLKLQVERNLDK*