Gene "CDKN2A"
Found 18 records
Gene information
Gene symbol:
CDKN2A
See related:
Ensembl: ENSG00000147889, Gene ID: 1029
Additive variants :
Undetected
Genetic interaction partners
No data
Modifier statisitcs
Record:
18
Disorder:
1
Vriant:
18
Reference:
2
Effect type:
Expressivity(14)
,Penetrance(4)
Modifier effect:
Risk factor(14)
,Prevention of disease(4)
Details:
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Variant 1:Gene:Genomic location:Target disease:Melanoma(DOID_1909)Effect type:ExpressivityModifier effect:Risk factorEvidence:Pedigree analysisEffect:Increased melanoma riskReference:Title:Influence of genes, nevi, and sun sensitivity on melanoma risk in a family sample unselected by family history and in melanoma-prone families.Species studied:HumanAbstract:Few family studies have investigated the effects of genetic, environmental, and host factors on melanoma risk, and most have been restricted to high-risk families. We assessed the role of these factors on melanoma risk in two types of families: families ascertained through melanoma probands but unselected by family history and melanoma-prone families.
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Variant 2:Gene:Genomic location:Target disease:Melanoma(DOID_1909)Effect type:ExpressivityModifier effect:Risk factorEvidence:Pedigree analysisEffect:Increased melanoma riskReference:Title:Influence of genes, nevi, and sun sensitivity on melanoma risk in a family sample unselected by family history and in melanoma-prone families.Species studied:HumanAbstract:Few family studies have investigated the effects of genetic, environmental, and host factors on melanoma risk, and most have been restricted to high-risk families. We assessed the role of these factors on melanoma risk in two types of families: families ascertained through melanoma probands but unselected by family history and melanoma-prone families.
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Variant 3:Gene:Genomic location:Target disease:Melanoma(DOID_1909)Effect type:ExpressivityModifier effect:Risk factorEvidence:Pedigree analysisEffect:Increased melanoma riskReference:Title:Influence of genes, nevi, and sun sensitivity on melanoma risk in a family sample unselected by family history and in melanoma-prone families.Species studied:HumanAbstract:Few family studies have investigated the effects of genetic, environmental, and host factors on melanoma risk, and most have been restricted to high-risk families. We assessed the role of these factors on melanoma risk in two types of families: families ascertained through melanoma probands but unselected by family history and melanoma-prone families.
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Variant 4:Gene:Genomic location:Target disease:Melanoma(DOID_1909)Effect type:ExpressivityModifier effect:Risk factorEvidence:Pedigree analysisEffect:Increased melanoma riskReference:Title:Influence of genes, nevi, and sun sensitivity on melanoma risk in a family sample unselected by family history and in melanoma-prone families.Species studied:HumanAbstract:Few family studies have investigated the effects of genetic, environmental, and host factors on melanoma risk, and most have been restricted to high-risk families. We assessed the role of these factors on melanoma risk in two types of families: families ascertained through melanoma probands but unselected by family history and melanoma-prone families.
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Variant 5:Gene:Genomic location:dbSNP ID:Target disease:Melanoma(DOID_1909)Effect type:ExpressivityModifier effect:Risk factorEvidence:Pedigree analysisEffect:Increased melanoma riskReference:Title:Influence of genes, nevi, and sun sensitivity on melanoma risk in a family sample unselected by family history and in melanoma-prone families.Species studied:HumanAbstract:Few family studies have investigated the effects of genetic, environmental, and host factors on melanoma risk, and most have been restricted to high-risk families. We assessed the role of these factors on melanoma risk in two types of families: families ascertained through melanoma probands but unselected by family history and melanoma-prone families.
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Variant 6:Gene:Genomic location:chr9:21974760dbSNP ID:Target disease:Melanoma(DOID_1909)Effect type:ExpressivityModifier effect:Risk factorEvidence:Pedigree analysisEffect:Increased melanoma riskReference:Title:Influence of genes, nevi, and sun sensitivity on melanoma risk in a family sample unselected by family history and in melanoma-prone families.Species studied:HumanAbstract:Few family studies have investigated the effects of genetic, environmental, and host factors on melanoma risk, and most have been restricted to high-risk families. We assessed the role of these factors on melanoma risk in two types of families: families ascertained through melanoma probands but unselected by family history and melanoma-prone families.
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Variant 7:Gene:Genomic location:chr9:21974777-21974780dbSNP ID:Target disease:Melanoma(DOID_1909)Effect type:ExpressivityModifier effect:Risk factorEvidence:Pedigree analysisEffect:Increased melanoma riskReference:Title:Influence of genes, nevi, and sun sensitivity on melanoma risk in a family sample unselected by family history and in melanoma-prone families.Species studied:HumanAbstract:Few family studies have investigated the effects of genetic, environmental, and host factors on melanoma risk, and most have been restricted to high-risk families. We assessed the role of these factors on melanoma risk in two types of families: families ascertained through melanoma probands but unselected by family history and melanoma-prone families.
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Variant 8:Gene:Genomic location:chr9:21970981dbSNP ID:Target disease:Melanoma(DOID_1909)Effect type:ExpressivityModifier effect:Risk factorEvidence:Pedigree analysisEffect:Increased melanoma riskReference:Title:Influence of genes, nevi, and sun sensitivity on melanoma risk in a family sample unselected by family history and in melanoma-prone families.Species studied:HumanAbstract:Few family studies have investigated the effects of genetic, environmental, and host factors on melanoma risk, and most have been restricted to high-risk families. We assessed the role of these factors on melanoma risk in two types of families: families ascertained through melanoma probands but unselected by family history and melanoma-prone families.
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Variant 9:Gene:Genomic location:chr9:21971018dbSNP ID:Target disease:Melanoma(DOID_1909)Effect type:PenetranceModifier effect:Prevention of diseaseEvidence:Pedigree analysisEffect:Improve the risk of melanomaReference:Title:Protective effect of copy number polymorphism of glutathione S-transferase T1 gene on melanoma risk in presence of CDKN2A mutations, MC1R variants and host-related phenotypes.Species studied:HumanAbstract:The effect of CDKN2A, the major high-risk melanoma susceptibility gene, has been shown to be modified by host-related phenotypes and variants of MC1R gene. The glutathione S-transferase (GSTs) genes, implicated in detoxification of metabolites after UV exposure, are candidates for modulating CDKN2A penetrance. Few case-control studies have investigated the effect of GSTs on melanoma risk, and have led to controversial results while these genes have not yet been studied in CDKN2A melanoma-prone families. We examined the effect of GSTP1, GSTM1 and GSTT1 genotypes on melanoma risk in 25 multi-generational melanoma-prone families with CDKN2A mutations, in presence of MC1R gene variants, sun exposure, and host-related phenotypes. These data included 195 genotyped subjects for all studied genes. We applied the GEE (Generalized Estimating Equations) approach to test for the effect of GSTs while adjusting for age, sex and CDKN2A mutation status and including successively MC1R, sun exposure and host factors in the model. No significant effect of null GSTM1 allele and GSTP1 variants (p.I105V, p.A114V) on melanoma risk was found. However, a significant protective effect of carrying >or=1 null GSTT1 allele was shown: OR(adjusted for age,sex,CDKN2A ) = 0.41 (0.18-0.94) and OR(adjusted for age,sex,CDKN2A,MC1R ) = 0.24 (0.15-0.58). Altogether, the factors modifying significantly the melanoma risk associated with CDKN2A mutations (stepwise procedure) were: MC1R and dysplastic nevi (increasing the risk) and GSTT1 (decreasing the risk). This study shows that even when a high-risk gene (CDKN2A) has been identified, multiple genetic modifiers influence melanoma risk.
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Variant 10:Gene:Genomic location:dbSNP ID:Target disease:Melanoma(DOID_1909)Effect type:PenetranceModifier effect:Prevention of diseaseEvidence:Pedigree analysisEffect:Improve the risk of melanomaReference:Title:Protective effect of copy number polymorphism of glutathione S-transferase T1 gene on melanoma risk in presence of CDKN2A mutations, MC1R variants and host-related phenotypes.Species studied:HumanAbstract:The effect of CDKN2A, the major high-risk melanoma susceptibility gene, has been shown to be modified by host-related phenotypes and variants of MC1R gene. The glutathione S-transferase (GSTs) genes, implicated in detoxification of metabolites after UV exposure, are candidates for modulating CDKN2A penetrance. Few case-control studies have investigated the effect of GSTs on melanoma risk, and have led to controversial results while these genes have not yet been studied in CDKN2A melanoma-prone families. We examined the effect of GSTP1, GSTM1 and GSTT1 genotypes on melanoma risk in 25 multi-generational melanoma-prone families with CDKN2A mutations, in presence of MC1R gene variants, sun exposure, and host-related phenotypes. These data included 195 genotyped subjects for all studied genes. We applied the GEE (Generalized Estimating Equations) approach to test for the effect of GSTs while adjusting for age, sex and CDKN2A mutation status and including successively MC1R, sun exposure and host factors in the model. No significant effect of null GSTM1 allele and GSTP1 variants (p.I105V, p.A114V) on melanoma risk was found. However, a significant protective effect of carrying >or=1 null GSTT1 allele was shown: OR(adjusted for age,sex,CDKN2A ) = 0.41 (0.18-0.94) and OR(adjusted for age,sex,CDKN2A,MC1R ) = 0.24 (0.15-0.58). Altogether, the factors modifying significantly the melanoma risk associated with CDKN2A mutations (stepwise procedure) were: MC1R and dysplastic nevi (increasing the risk) and GSTT1 (decreasing the risk). This study shows that even when a high-risk gene (CDKN2A) has been identified, multiple genetic modifiers influence melanoma risk.
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Variant 11:Gene:Genomic location:chr9:21971057dbSNP ID:Target disease:Melanoma(DOID_1909)Effect type:ExpressivityModifier effect:Risk factorEvidence:Pedigree analysisEffect:Increased melanoma riskReference:Title:Influence of genes, nevi, and sun sensitivity on melanoma risk in a family sample unselected by family history and in melanoma-prone families.Species studied:HumanAbstract:Few family studies have investigated the effects of genetic, environmental, and host factors on melanoma risk, and most have been restricted to high-risk families. We assessed the role of these factors on melanoma risk in two types of families: families ascertained through melanoma probands but unselected by family history and melanoma-prone families.
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Variant 12:Gene:Genomic location:chr9:21971152dbSNP ID:Target disease:Melanoma(DOID_1909)Effect type:PenetranceModifier effect:Prevention of diseaseEvidence:Pedigree analysisEffect:Improve the risk of melanomaReference:Title:Protective effect of copy number polymorphism of glutathione S-transferase T1 gene on melanoma risk in presence of CDKN2A mutations, MC1R variants and host-related phenotypes.Species studied:HumanAbstract:The effect of CDKN2A, the major high-risk melanoma susceptibility gene, has been shown to be modified by host-related phenotypes and variants of MC1R gene. The glutathione S-transferase (GSTs) genes, implicated in detoxification of metabolites after UV exposure, are candidates for modulating CDKN2A penetrance. Few case-control studies have investigated the effect of GSTs on melanoma risk, and have led to controversial results while these genes have not yet been studied in CDKN2A melanoma-prone families. We examined the effect of GSTP1, GSTM1 and GSTT1 genotypes on melanoma risk in 25 multi-generational melanoma-prone families with CDKN2A mutations, in presence of MC1R gene variants, sun exposure, and host-related phenotypes. These data included 195 genotyped subjects for all studied genes. We applied the GEE (Generalized Estimating Equations) approach to test for the effect of GSTs while adjusting for age, sex and CDKN2A mutation status and including successively MC1R, sun exposure and host factors in the model. No significant effect of null GSTM1 allele and GSTP1 variants (p.I105V, p.A114V) on melanoma risk was found. However, a significant protective effect of carrying >or=1 null GSTT1 allele was shown: OR(adjusted for age,sex,CDKN2A ) = 0.41 (0.18-0.94) and OR(adjusted for age,sex,CDKN2A,MC1R ) = 0.24 (0.15-0.58). Altogether, the factors modifying significantly the melanoma risk associated with CDKN2A mutations (stepwise procedure) were: MC1R and dysplastic nevi (increasing the risk) and GSTT1 (decreasing the risk). This study shows that even when a high-risk gene (CDKN2A) has been identified, multiple genetic modifiers influence melanoma risk.
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Variant 13:Gene:Genomic location:dbSNP ID:Target disease:Melanoma(DOID_1909)Effect type:ExpressivityModifier effect:Risk factorEvidence:Pedigree analysisEffect:Increased melanoma riskReference:Title:Influence of genes, nevi, and sun sensitivity on melanoma risk in a family sample unselected by family history and in melanoma-prone families.Species studied:HumanAbstract:Few family studies have investigated the effects of genetic, environmental, and host factors on melanoma risk, and most have been restricted to high-risk families. We assessed the role of these factors on melanoma risk in two types of families: families ascertained through melanoma probands but unselected by family history and melanoma-prone families.
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Variant 14:Gene:Genomic location:chr9:21971159dbSNP ID:Target disease:Melanoma(DOID_1909)Effect type:PenetranceModifier effect:Prevention of diseaseEvidence:Pedigree analysisEffect:Improve the risk of melanomaReference:Title:Protective effect of copy number polymorphism of glutathione S-transferase T1 gene on melanoma risk in presence of CDKN2A mutations, MC1R variants and host-related phenotypes.Species studied:HumanAbstract:The effect of CDKN2A, the major high-risk melanoma susceptibility gene, has been shown to be modified by host-related phenotypes and variants of MC1R gene. The glutathione S-transferase (GSTs) genes, implicated in detoxification of metabolites after UV exposure, are candidates for modulating CDKN2A penetrance. Few case-control studies have investigated the effect of GSTs on melanoma risk, and have led to controversial results while these genes have not yet been studied in CDKN2A melanoma-prone families. We examined the effect of GSTP1, GSTM1 and GSTT1 genotypes on melanoma risk in 25 multi-generational melanoma-prone families with CDKN2A mutations, in presence of MC1R gene variants, sun exposure, and host-related phenotypes. These data included 195 genotyped subjects for all studied genes. We applied the GEE (Generalized Estimating Equations) approach to test for the effect of GSTs while adjusting for age, sex and CDKN2A mutation status and including successively MC1R, sun exposure and host factors in the model. No significant effect of null GSTM1 allele and GSTP1 variants (p.I105V, p.A114V) on melanoma risk was found. However, a significant protective effect of carrying >or=1 null GSTT1 allele was shown: OR(adjusted for age,sex,CDKN2A ) = 0.41 (0.18-0.94) and OR(adjusted for age,sex,CDKN2A,MC1R ) = 0.24 (0.15-0.58). Altogether, the factors modifying significantly the melanoma risk associated with CDKN2A mutations (stepwise procedure) were: MC1R and dysplastic nevi (increasing the risk) and GSTT1 (decreasing the risk). This study shows that even when a high-risk gene (CDKN2A) has been identified, multiple genetic modifiers influence melanoma risk.
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Variant 15:Gene:Genomic location:dbSNP ID:Target disease:Melanoma(DOID_1909)Effect type:ExpressivityModifier effect:Risk factorEvidence:Pedigree analysisEffect:Increased melanoma riskReference:Title:Influence of genes, nevi, and sun sensitivity on melanoma risk in a family sample unselected by family history and in melanoma-prone families.Species studied:HumanAbstract:Few family studies have investigated the effects of genetic, environmental, and host factors on melanoma risk, and most have been restricted to high-risk families. We assessed the role of these factors on melanoma risk in two types of families: families ascertained through melanoma probands but unselected by family history and melanoma-prone families.
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Variant 16:Gene:Genomic location:dbSNP ID:Target disease:Melanoma(DOID_1909)Effect type:ExpressivityModifier effect:Risk factorEvidence:Pedigree analysisEffect:Increased melanoma riskReference:Title:Influence of genes, nevi, and sun sensitivity on melanoma risk in a family sample unselected by family history and in melanoma-prone families.Species studied:HumanAbstract:Few family studies have investigated the effects of genetic, environmental, and host factors on melanoma risk, and most have been restricted to high-risk families. We assessed the role of these factors on melanoma risk in two types of families: families ascertained through melanoma probands but unselected by family history and melanoma-prone families.
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Variant 17:Gene:Genomic location:chr9:21971199dbSNP ID:Target disease:Melanoma(DOID_1909)Effect type:ExpressivityModifier effect:Risk factorEvidence:Pedigree analysisEffect:Increased melanoma riskReference:Title:Influence of genes, nevi, and sun sensitivity on melanoma risk in a family sample unselected by family history and in melanoma-prone families.Species studied:HumanAbstract:Few family studies have investigated the effects of genetic, environmental, and host factors on melanoma risk, and most have been restricted to high-risk families. We assessed the role of these factors on melanoma risk in two types of families: families ascertained through melanoma probands but unselected by family history and melanoma-prone families.
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Variant 18:Gene:Genomic location:Target disease:Melanoma(DOID_1909)Effect type:ExpressivityModifier effect:Risk factorEvidence:Pedigree analysisEffect:Increased melanoma riskReference:Title:Influence of genes, nevi, and sun sensitivity on melanoma risk in a family sample unselected by family history and in melanoma-prone families.Species studied:HumanAbstract:Few family studies have investigated the effects of genetic, environmental, and host factors on melanoma risk, and most have been restricted to high-risk families. We assessed the role of these factors on melanoma risk in two types of families: families ascertained through melanoma probands but unselected by family history and melanoma-prone families.