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病毒基因组
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基因组编号 毒株名称 引用编号 病毒类型 物种名称 采样国家 采样时间 宿主 序列长度 发布时间 分离来源 物种ID 种名 属名 科名 数据源 采样单位 采样地址 提交者 提交者单位 覆盖度 有效碱基数量 有效碱基百分比
OEAV6116991 SARS-CoV-2/Hamster/HKG/HKPU-HKU-HD-Cage-B-H20/2022 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes OM475741 RNA viruses Severe acute respiratory syndrome coronavirus 2 China 2022-01-19 Cricetinae 29769 2022-02-02 oronasopharynx 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Kok,K.-H., Wong,S.-C., Chan,W.-M., Lei,W., Chu,A.W.-H., Ip,J.D., Lee,L.-K., Wong,I.T.-F., Lo,H.W.-H., Wong,E.Y.-K., Lao,H.-Y., Leung,J.S.-L., Cheng,V.C.-C., Ho,A.Y.-M., Lam,B.H.-S., Tse,H., Lung,D., Ng,K.H.-L., Au,A.K.-W., Siu,G.K.-H. and Yuen,K.-Y. Department of Health Technology and Informatics, The Hong Kong Polytechnic University 29170 97.99
OEAV6116992 SARS-CoV-2/Hamster/HKG/HKPU-HKU-HD-Cage-C-H10/2022 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes OM475742 RNA viruses Severe acute respiratory syndrome coronavirus 2 China 2022-01-19 Cricetinae 29769 2022-02-02 oronasopharynx 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Kok,K.-H., Wong,S.-C., Chan,W.-M., Lei,W., Chu,A.W.-H., Ip,J.D., Lee,L.-K., Wong,I.T.-F., Lo,H.W.-H., Wong,E.Y.-K., Lao,H.-Y., Leung,J.S.-L., Cheng,V.C.-C., Ho,A.Y.-M., Lam,B.H.-S., Tse,H., Lung,D., Ng,K.H.-L., Au,A.K.-W., Siu,G.K.-H. and Yuen,K.-Y. Department of Health Technology and Informatics, The Hong Kong Polytechnic University 29228 98.18
OEAV6116993 SARS-CoV-2/Hamster/HKG/HKPU-HKU-HD-Cage-C-H11/2022 ORF1ab polyprotein (ORF1ab) gene, complete cds; ORF1a polyprotein (ORF1ab) gene, partial cds; and surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes OM475743 RNA viruses Severe acute respiratory syndrome coronavirus 2 China 2022-01-19 Cricetinae 29769 2022-02-02 oronasopharynx 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Kok,K.-H., Wong,S.-C., Chan,W.-M., Lei,W., Chu,A.W.-H., Ip,J.D., Lee,L.-K., Wong,I.T.-F., Lo,H.W.-H., Wong,E.Y.-K., Lao,H.-Y., Leung,J.S.-L., Cheng,V.C.-C., Ho,A.Y.-M., Lam,B.H.-S., Tse,H., Lung,D., Ng,K.H.-L., Au,A.K.-W., Siu,G.K.-H. and Yuen,K.-Y. Department of Health Technology and Informatics, The Hong Kong Polytechnic University 28966 97.30
OEAV6116994 SARS-CoV-2/Hamster/HKG/HKPU-HKU-HD-Cage-C-H12/2022 ORF1ab polyprotein (ORF1ab) gene, complete cds; ORF1a polyprotein (ORF1ab) gene, partial cds; and surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes OM475744 RNA viruses Severe acute respiratory syndrome coronavirus 2 China 2022-01-19 Cricetinae 29769 2022-02-02 oronasopharynx 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Kok,K.-H., Wong,S.-C., Chan,W.-M., Lei,W., Chu,A.W.-H., Ip,J.D., Lee,L.-K., Wong,I.T.-F., Lo,H.W.-H., Wong,E.Y.-K., Lao,H.-Y., Leung,J.S.-L., Cheng,V.C.-C., Ho,A.Y.-M., Lam,B.H.-S., Tse,H., Lung,D., Ng,K.H.-L., Au,A.K.-W., Siu,G.K.-H. and Yuen,K.-Y. Department of Health Technology and Informatics, The Hong Kong Polytechnic University 28659 96.27
OEAV6116995 SARS-CoV-2/Hamster/HKG/HKPU-HKU-HD-NTS-S-2022-01-10-Fecal/2022 ORF1ab polyprotein (ORF1ab) gene, complete cds; ORF1a polyprotein (ORF1ab) gene, partial cds; and surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes OM475746 RNA viruses Severe acute respiratory syndrome coronavirus 2 China 2022-01-19 Cricetinae 29769 2022-02-02 feces 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Kok,K.-H., Wong,S.-C., Chan,W.-M., Lei,W., Chu,A.W.-H., Ip,J.D., Lee,L.-K., Wong,I.T.-F., Lo,H.W.-H., Wong,E.Y.-K., Lao,H.-Y., Leung,J.S.-L., Cheng,V.C.-C., Ho,A.Y.-M., Lam,B.H.-S., Tse,H., Lung,D., Ng,K.H.-L., Au,A.K.-W., Siu,G.K.-H. and Yuen,K.-Y. Department of Health Technology and Informatics, The Hong Kong Polytechnic University 28671 96.31
OEAV6116996 SARS-CoV-2/Hamster/HKG/HKPU-HKU-HD-NTS-S-2022-01-10-Oral/2022 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes OM475745 RNA viruses Severe acute respiratory syndrome coronavirus 2 China 2022-01-19 Cricetinae 29769 2022-02-02 oronasopharynx 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Kok,K.-H., Wong,S.-C., Chan,W.-M., Lei,W., Chu,A.W.-H., Ip,J.D., Lee,L.-K., Wong,I.T.-F., Lo,H.W.-H., Wong,E.Y.-K., Lao,H.-Y., Leung,J.S.-L., Cheng,V.C.-C., Ho,A.Y.-M., Lam,B.H.-S., Tse,H., Lung,D., Ng,K.H.-L., Au,A.K.-W., Siu,G.K.-H. and Yuen,K.-Y. Department of Health Technology and Informatics, The Hong Kong Polytechnic University 29479 99.03
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