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病毒基因组
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基因组编号 毒株名称 引用编号 病毒类型 物种名称 采样国家 采样时间 宿主 序列长度 发布时间 分离来源 物种ID 种名 属名 科名 数据源 采样单位 采样地址 提交者 提交者单位 覆盖度 有效碱基数量 有效碱基百分比
OEAV210203 SARS-CoV-2/environment/ITA/3233/2020 ORF1ab polyprotein, 3'-to-5' exonuclease region, (ORF1ab) gene MT373157 RNA viruses Severe acute respiratory syndrome coronavirus 2 Italy 2020-02-28 wastewater metagenome 287 2020-06-02 raw sewage 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank La Rosa,G., Iaconelli,M., Mancini,P., Bonanno Ferraro,G., Veneri,C., Bonadonna,L., Lucentini,L. and Suffredini,E. Department of Food Safety 287 100.00
OEAV210204 SARS-CoV-2/environment/ITA/3243/2020 ORF1ab polyprotein, 3'-to-5' exonuclease region, (ORF1ab) gene MT373158 RNA viruses Severe acute respiratory syndrome coronavirus 2 Italy 2020-02-28 wastewater metagenome 287 2020-06-02 raw sewage 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank La Rosa,G., Iaconelli,M., Mancini,P., Bonanno Ferraro,G., Veneri,C., Bonadonna,L., Lucentini,L. and Suffredini,E. Department of Food Safety 287 100.00
OEAV210205 SARS-CoV-2/environment/ITA/3243/2020 surface glycoprotein (S) gene MT373162 RNA viruses Severe acute respiratory syndrome coronavirus 2 Italy 2020-02-28 wastewater metagenome 469 2020-06-02 raw sewage 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank La Rosa,G., Iaconelli,M., Mancini,P., Bonanno Ferraro,G., Veneri,C., Bonadonna,L., Lucentini,L. and Suffredini,E. Department of Food Safety 469 100.00
OEAV210206 SARS-CoV-2/environment/ITA/3267/2020 ORF1ab polyprotein, 3'-to-5' exonuclease region, (ORF1ab) gene MT373156 RNA viruses Severe acute respiratory syndrome coronavirus 2 Italy 2020-03-30 wastewater metagenome 287 2020-06-02 raw sewage 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank La Rosa,G., Iaconelli,M., Mancini,P., Bonanno Ferraro,G., Veneri,C., Bonadonna,L., Lucentini,L. and Suffredini,E. Department of Food Safety 287 100.00
OEAV210207 SARS-CoV-2/environment/ITA/3268/2020 ORF1ab polyprotein, 3'-to-5' exonuclease region, (ORF1ab) gene MT373159 RNA viruses Severe acute respiratory syndrome coronavirus 2 Italy 2020-03-30 wastewater metagenome 287 2020-06-02 raw sewage 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank La Rosa,G., Iaconelli,M., Mancini,P., Bonanno Ferraro,G., Veneri,C., Bonadonna,L., Lucentini,L. and Suffredini,E. Department of Food Safety 287 100.00
OEAV210208 SARS-CoV-2/environment/ITA/3269/2020 ORF1ab polyprotein, 3'-to-5' exonuclease region, (ORF1ab) gene MT373160 RNA viruses Severe acute respiratory syndrome coronavirus 2 Italy 2020-04-30 wastewater metagenome 287 2020-06-02 raw sewage 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank La Rosa,G., Iaconelli,M., Mancini,P., Bonanno Ferraro,G., Veneri,C., Bonadonna,L., Lucentini,L. and Suffredini,E. Department of Food Safety 287 100.00
OEAV210209 SARS-CoV-2/environment/ITA/3270/2020 ORF1ab polyprotein, 3'-to-5' exonuclease region, (ORF1ab) gene MT373161 RNA viruses Severe acute respiratory syndrome coronavirus 2 Italy 2020-04-30 wastewater metagenome 287 2020-06-02 raw sewage 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank La Rosa,G., Iaconelli,M., Mancini,P., Bonanno Ferraro,G., Veneri,C., Bonadonna,L., Lucentini,L. and Suffredini,E. Department of Food Safety 287 100.00
OEAV210210 SARS-CoV-2/environment/ITA/3270/2020 surface glycoprotein (S) gene MT373163 RNA viruses Severe acute respiratory syndrome coronavirus 2 Italy 2020-04-30 wastewater metagenome 469 2020-06-02 raw sewage 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank La Rosa,G., Iaconelli,M., Mancini,P., Bonanno Ferraro,G., Veneri,C., Bonadonna,L., Lucentini,L. and Suffredini,E. Department of Food Safety 469 100.00
OEAV210211 SARS-CoV-2/environment/PAK/PAK-RIU-ES-01/2020 ORF1ab polyprotein (ORF1ab) and ORF1a polyprotein (ORF1ab) genes MT539157 RNA viruses Severe acute respiratory syndrome coronavirus 2 Pakistan 2020-04-17 wastewater metagenome 346 2020-05-30 wastewater;sewage sample 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Sharif,S., Khurshid,A., Mahmood,N., Arshad,Y., Salman,M., Ikram,A., Badar,N., Umair,M., Tamim,S., Angez,M., Alam,M. and Ahad,A. Virology 346 100.00
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