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病毒基因组
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基因组编号 毒株名称 引用编号 病毒类型 物种名称 采样国家 采样时间 宿主 序列长度 发布时间 分离来源 物种ID 种名 属名 科名 数据源 采样单位 采样地址 提交者 提交者单位 覆盖度 有效碱基数量 有效碱基百分比
OEAV859403 SARS-CoV-2/Environment/NPL/GW14/2020 ORF1ab polyprotein (ORF1ab) gene, partial cds; ORF1a polyprotein (ORF1ab) gene, complete cds; surface glycoprotein (S) gene, partial cds; ORF3a protein (ORF3a) gene, complete cds; envelope protein (E) and membrane glycoprotein (M) genes, partial cds; ORF6 protein (ORF6) gene, complete cds; and ORF7a protein (ORF7a), ORF8 protein (ORF8), and nucleocapsid phosphoprotein (N) genes MW739929 RNA viruses Severe acute respiratory syndrome coronavirus 2 Nepal 2020-11-11 wastewater metagenome 29302 2021-03-14 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Napit,R., Manandhar,P. and Karmacharya,D. One Health Research Division, Center for Molecular Dynamics Nepal, Thapathali-11, Kathmandu, Bagmati 44600 17315 59.09
OEAV859404 SARS-CoV-2/Environment/NPL/GW15/2020 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), and surface glycoprotein (S) genes, partial cds; ORF3a protein (ORF3a) gene, complete cds; envelope protein (E) and membrane glycoprotein (M) genes, partial cds; ORF6 protein (ORF6) gene, complete cds; and ORF7a protein (ORF7a), ORF8 protein (ORF8), and nucleocapsid phosphoprotein (N) genes MW739930 RNA viruses Severe acute respiratory syndrome coronavirus 2 Nepal 2020-12-01 wastewater metagenome 29014 2021-03-14 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Napit,R., Manandhar,P. and Karmacharya,D. One Health Research Division, Center for Molecular Dynamics Nepal, Thapathali-11, Kathmandu, Bagmati 44600 20375 70.22
OEAV591818 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/Sewage/USA/UF-39/2021 MW605100 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2021-01-12 wastewater metagenome 29884 2021-02-16 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Rainey,A., Bisesi,S.E., Loeb,J.C., Maurelli,A.T., Sabo-Attwood,T., Lednicky,J.A. and Bisesi,J.H. Environmental and Global Health, University of Florida 29884 100.00
OEAV591819 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/Sewage/USA/UF-40/2020 MW605103 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2020-08-12 wastewater metagenome 29895 2021-02-16 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Rainey,A., Bisesi,S.E., Loeb,J.C., Maurelli,A.T., Sabo-Attwood,T., Lednicky,J.A. and Bisesi,J.H. Environmental and Global Health, University of Florida 29895 100.00
OEAV251431 SARS-CoV-2/environment/ITA/3230/2020 ORF1ab polyprotein, 3'-to-5' exonuclease region, (ORF1ab) gene MT843229 RNA viruses Severe acute respiratory syndrome coronavirus 2 Italy 2020-02-25 wastewater metagenome 287 2020-08-28 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank La Rosa,G., Mancini,P., Bonanno Ferraro,G., Veneri,C., Iaconelli,M., Bonadonna,L., Lucentini,L. and Suffredini,E. Food Safety 287 100.00
OEAV251432 SARS-CoV-2/environment/ITA/3232/2020 ORF1ab polyprotein, 3'-to-5' exonuclease region, (ORF1ab) gene MT843230 RNA viruses Severe acute respiratory syndrome coronavirus 2 Italy 2020-02-19 wastewater metagenome 287 2020-08-28 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank La Rosa,G., Mancini,P., Bonanno Ferraro,G., Veneri,C., Iaconelli,M., Bonadonna,L., Lucentini,L. and Suffredini,E. Food Safety 287 100.00
OEAV251433 SARS-CoV-2/environment/ITA/3234/2020 ORF1ab polyprotein, 3'-to-5' exonuclease region, (ORF1ab) gene MT843231 RNA viruses Severe acute respiratory syndrome coronavirus 2 Italy 2020-02-26 wastewater metagenome 287 2020-08-28 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank La Rosa,G., Mancini,P., Bonanno Ferraro,G., Veneri,C., Iaconelli,M., Bonadonna,L., Lucentini,L. and Suffredini,E. Food Safety 287 100.00
OEAV251434 SARS-CoV-2/environment/ITA/3241/2020 ORF1ab polyprotein, 3'-to-5' exonuclease region, (ORF1ab) gene MT843232 RNA viruses Severe acute respiratory syndrome coronavirus 2 Italy 2020-02-23 wastewater metagenome 287 2020-08-28 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank La Rosa,G., Mancini,P., Bonanno Ferraro,G., Veneri,C., Iaconelli,M., Bonadonna,L., Lucentini,L. and Suffredini,E. Food Safety 287 100.00
OEAV251435 SARS-CoV-2/environment/ITA/3243/2020 ORF1ab polyprotein, 3'-to-5' exonuclease region, (ORF1ab) gene MT843233 RNA viruses Severe acute respiratory syndrome coronavirus 2 Italy 2020-02-28 wastewater metagenome 287 2020-08-28 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank La Rosa,G., Mancini,P., Bonanno Ferraro,G., Veneri,C., Iaconelli,M., Bonadonna,L., Lucentini,L. and Suffredini,E. Food Safety 287 100.00
OEAV251436 SARS-CoV-2/environment/ITA/3289/2019 ORF1ab polyprotein, 3'-to-5' exonuclease region, (ORF1ab) gene MT843234 RNA viruses Severe acute respiratory syndrome coronavirus 2 Italy 2019-12-18 wastewater metagenome 287 2020-08-28 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank La Rosa,G., Mancini,P., Bonanno Ferraro,G., Veneri,C., Iaconelli,M., Bonadonna,L., Lucentini,L. and Suffredini,E. Food Safety 287 100.00
OEAV251437 SARS-CoV-2/environment/ITA/3333/2019 ORF1ab polyprotein, 3'-to-5' exonuclease region, (ORF1ab) gene MT843235 RNA viruses Severe acute respiratory syndrome coronavirus 2 Italy 2019-12-18 wastewater metagenome 287 2020-08-28 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank La Rosa,G., Mancini,P., Bonanno Ferraro,G., Veneri,C., Iaconelli,M., Bonadonna,L., Lucentini,L. and Suffredini,E. Food Safety 287 100.00
OEAV251438 SARS-CoV-2/environment/ITA/3335/2019 ORF1ab polyprotein, 3'-to-5' exonuclease region, (ORF1ab) gene MT843236 RNA viruses Severe acute respiratory syndrome coronavirus 2 Italy 2019-12-18 wastewater metagenome 287 2020-08-28 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank La Rosa,G., Mancini,P., Bonanno Ferraro,G., Veneri,C., Iaconelli,M., Bonadonna,L., Lucentini,L. and Suffredini,E. Food Safety 287 100.00
OEAV251439 SARS-CoV-2/environment/ITA/3337/2020 ORF1ab polyprotein, 3'-to-5' exonuclease region, (ORF1ab) gene MT843237 RNA viruses Severe acute respiratory syndrome coronavirus 2 Italy 2020-01-14 wastewater metagenome 287 2020-08-28 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank La Rosa,G., Mancini,P., Bonanno Ferraro,G., Veneri,C., Iaconelli,M., Bonadonna,L., Lucentini,L. and Suffredini,E. Food Safety 287 100.00
OEAV251440 SARS-CoV-2/environment/ITA/3347/2020 ORF1ab polyprotein, 3'-to-5' exonuclease region, (ORF1ab) gene MT843238 RNA viruses Severe acute respiratory syndrome coronavirus 2 Italy 2020-02-25 wastewater metagenome 287 2020-08-28 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank La Rosa,G., Mancini,P., Bonanno Ferraro,G., Veneri,C., Iaconelli,M., Bonadonna,L., Lucentini,L. and Suffredini,E. Food Safety 287 100.00
OEAV251441 SARS-CoV-2/environment/ITA/3349/2020 ORF1ab polyprotein, 3'-to-5' exonuclease region, (ORF1ab) gene MT843239 RNA viruses Severe acute respiratory syndrome coronavirus 2 Italy 2020-02-26 wastewater metagenome 287 2020-08-28 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank La Rosa,G., Mancini,P., Bonanno Ferraro,G., Veneri,C., Iaconelli,M., Bonadonna,L., Lucentini,L. and Suffredini,E. Food Safety 287 100.00
OEAV251442 SARS-CoV-2/environment/ITA/3376/2020 ORF1ab polyprotein, 3'-to-5' exonuclease region, (ORF1ab) gene MT843240 RNA viruses Severe acute respiratory syndrome coronavirus 2 Italy 2020-01-29 wastewater metagenome 287 2020-08-28 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank La Rosa,G., Mancini,P., Bonanno Ferraro,G., Veneri,C., Iaconelli,M., Bonadonna,L., Lucentini,L. and Suffredini,E. Food Safety 287 100.00
OEAV210203 SARS-CoV-2/environment/ITA/3233/2020 ORF1ab polyprotein, 3'-to-5' exonuclease region, (ORF1ab) gene MT373157 RNA viruses Severe acute respiratory syndrome coronavirus 2 Italy 2020-02-28 wastewater metagenome 287 2020-06-02 raw sewage 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank La Rosa,G., Iaconelli,M., Mancini,P., Bonanno Ferraro,G., Veneri,C., Bonadonna,L., Lucentini,L. and Suffredini,E. Department of Food Safety 287 100.00
OEAV210204 SARS-CoV-2/environment/ITA/3243/2020 ORF1ab polyprotein, 3'-to-5' exonuclease region, (ORF1ab) gene MT373158 RNA viruses Severe acute respiratory syndrome coronavirus 2 Italy 2020-02-28 wastewater metagenome 287 2020-06-02 raw sewage 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank La Rosa,G., Iaconelli,M., Mancini,P., Bonanno Ferraro,G., Veneri,C., Bonadonna,L., Lucentini,L. and Suffredini,E. Department of Food Safety 287 100.00
OEAV210205 SARS-CoV-2/environment/ITA/3243/2020 surface glycoprotein (S) gene MT373162 RNA viruses Severe acute respiratory syndrome coronavirus 2 Italy 2020-02-28 wastewater metagenome 469 2020-06-02 raw sewage 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank La Rosa,G., Iaconelli,M., Mancini,P., Bonanno Ferraro,G., Veneri,C., Bonadonna,L., Lucentini,L. and Suffredini,E. Department of Food Safety 469 100.00
OEAV210206 SARS-CoV-2/environment/ITA/3267/2020 ORF1ab polyprotein, 3'-to-5' exonuclease region, (ORF1ab) gene MT373156 RNA viruses Severe acute respiratory syndrome coronavirus 2 Italy 2020-03-30 wastewater metagenome 287 2020-06-02 raw sewage 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank La Rosa,G., Iaconelli,M., Mancini,P., Bonanno Ferraro,G., Veneri,C., Bonadonna,L., Lucentini,L. and Suffredini,E. Department of Food Safety 287 100.00
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