Gramella echinicola Nedashkovskaya et al. 2005
General information
Name
Gramella echinicola
Valid publication
2005
Nomenclature type
DSM 19838
;IAM 15331;JCM 13510
;KCTC 12278
;KMM 6050;LMG 22585
;NBRC 100593
Etymology
L. n. <i>echinus</i>, a hedgehog, urchin; L. suff. -<i>cola</i> (from L. n. <i>incola</i>), dweller; N.L. n. <i>echinicola</i>, a urchin-dweller.
Ecology
Source
isolated from the sea urchin Strongylocentrotus intermedius, which was collected at a depth of 3 m in Troitsa Bay, Gulf of Peter the Great, Sea of Japan, Pacific Ocean.
Morphology
Cells are non-endospore-forming rods (0.5-0.7 × 2.1-2.7 µm), motile by gliding. On marine agar, colonies are 2-4 mm in diameter, circular, shiny with entire edges and yellow-orange in colour.
Morphology standardized
cell shape | length | width |
---|---|---|
rod | 2.1-2.7 | 0.5-0.7 |
motility |
---|
- |
Physiology
Nutrition type
chemoorganotroph
Oxygen requirement
obligately aerobic
GC
GC_content |
---|
39.6 |
Gram
staining |
---|
negative |
Growth temperature
optimum |
---|
23.0-25.0 |
range |
---|
4.0-37.0 |
Halophily
range |
---|
1-15% |
C/N source
positive results | |||||||
---|---|---|---|---|---|---|---|
xylan | aesculin | mannan | D-maltose | D-glucose | D-galactose | D-sucrose | L-raffinose |
negative results | |||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
pectin | chitosan | urea | carboxymethylcellulose | tween 20 | chitin | D-melibiose | mannitol | L-fucose | dulcitol | L-rhamnose | inositol | glycerol | D-lactose | D-cellobiose | adonitol | citrate | malonate | sorbitol | D-mannose |
Biochemistry
Fattyacids
Name | Account |
---|---|
iso-C16:1 | 5.8 |
iso-C16:0 | 13.1 |
C15:0 | 7.1 |
C16:1 ω7 and/or iso-C15:0 2-OH | 11.4 |
anteiso-C15:0 | 7.6 |
iso-C15:0 | 14.4 |
iso-C16:0 3-OH | 5.9 |
iso-C17:0 3-OH | 6.7 |
H2s pdu
-
Indole pdu
-
Nitrate rdc
-
Polar lipids
PE
Quinones
MK-6
Vp test
-
Enzymology
Enzyme | Activity |
---|---|
alkaline phosphatase | + |
catalase | + |
cytochrome oxidase | + |
oxidase | + |
β-galactosidase | + |
Taxonomy marker
Genomics
Submitter date: 2013/07/11 00:00 Update date: 2014/07/11 00:00
Source
DOE Joint Genome Institute
Coverage
0
Assembly status
Scaffold
Assembly class
haploid
Strain List
References
1
Nedashkovskaya, O.I., Kim, S.B., Lysenko, A.M., Frolova, G.M., Mikhailov, V.V., Bae, K.S., Lee, D.H., and Kim, I.S. Gramella echinicola gen. nov., sp. nov., a novel halophilic bacterium of the family Flavobacteriaceae isolated from the sea urchin Strongylocentrotus intermedius. Int. J. Syst. Evol. Microbiol. (2005) 55:391-394.[DOI:10.1099/ijs.0.63314-0]
[PMID:15653906]
2
Jeong, S.H., Jin, H.M., and Jeon, C.O. Gramella aestuarii sp. nov., isolated from a tidal flat, and emended description of Gramella echinicola. Int. J. Syst. Evol. Microbiol. (2013) 63:2872-2878.[DOI:10.1099/ijs.0.048694-0]
[PMID:23315405]
3
Shahina, M., Hameed, A., Lin, S.-Y., Lee, R.-J., Lee, M.-R., and Young, C.-C. Gramella planctonica sp. nov., a zeaxanthin-producing bacterium isolated from surface seawater, and emended descriptions of Gramella aestuarii and Gramella echinicola. Antonie van Leeuwenhoek (2014) 105:771-779.[DOI:10.1007/s10482-014-0133-4]
[PMID:24522286]
4
List of Changes in Taxonomic Opinion No. 20. Int. J. Syst. Evol. Microbiol. (2014) 64:2191-2192.[DOI:10.1099/ijs.0.066134-0]
5
Panschin, I., Huang, S., Meier-Kolthoff, J.P., Tindall, B.J., Rohde, M., Verbarg, S., Lapidus, A., Han, J., Trong, S., Haynes, M., Reddy, T.B.K., Huntemann, M., Pati, A., Ivanova, N.N., Mavromatis, K., Markowitz, V., Woyke, T., Goker, M., Klenk, H.-P., Kyrpides, N.C., and Hahnke, R.L. Comparing polysaccharide decomposition between the type strains Gramella echinicola KMM 6050(T) (DSM 19838(T)) and Gramella portivictoriae UST040801-001(T) (DSM 23547(T)), and emended description of Gramella echinicola Nedashkovskaya et al. 2005 emend. Shahina et al. 2014 and Gramella portivictoriae Lau et al. 2005. Stand. Genomic Sci. (2016) 11:37.[DOI:10.1186/s40793-016-0163-9]
[PMID:27274783]
[PMCID:PMC4891872]
6
List of Changes in Taxonomic Opinion No. 25. Int. J. Syst. Evol. Microbiol. (2017) 67:7-8.[DOI:10.1099/ijsem.0.001710]