Biostraticola tofi Verbarg et al. 2008
General information
Name
Biostraticola tofi
Valid publication
2008
Effective publication
2008
Nomenclature type
BF36;CIP 109699;DSM 19580
Etymology
L. gen. n. <i>tofi</i>, of/from tufa.
Ecology
GPS
51°45'49" N 10°05'31.7" E.
Source
isolated from a biofilm layer on top of a tufa deposit of the hard water creek Westerhöfer Bach, western slopes of the Harz Mountains, Lower Saxony, Germany.
Morphology
Cells are non-motile, non-spore-forming rods (1-1.3 × 3-4 µm). Colonies on R2A whitish, up to 3.5 mm in diameter.
Morphology standardized
cell shape | length | width |
---|---|---|
rod | 3-4 | 1-1.3 |
motility |
---|
+ |
Physiology
Oxygen requirement
facultatively anaerobic
GC
GC_content |
---|
54.2 |
Gram
staining |
---|
negative |
Growth temperature
range |
---|
2.0-25.0 |
5.0-30.0 |
Growth PH
range |
---|
5.0-9.2 |
C/N source
positive results | |
---|---|
starch | malonate |
negative results | |||||||||||||||||||||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
gluconate | arbutine | cellobiose | mannitol | L-fucose | ribose | L-arabinose | galactose | aesculin | glucose | trehalose | D-arabitol | tyrosine | mannose | tween 80 | acetate | n-acetyl-glucosamine | D-xylose | phenylalanine | glycerol | rhamnose | casein | fructose | lactose | citrate | methylpyruvate | melibiose | sucrose | raffinose | salicine | maltose | D-fructose | dulcitol | L-rhamnose | D-glucose | D-trehalose | D-gluconate | D-mannitol | sorbitol | D-galactose | inositol | arabinose | malate | D-mannose |
Antibiotic
sensitivity | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
kanamycin | oxytetracycline | doxycycline | imipenem | cefazolin | ofloxacin | norfloxacin | mezlocillin | gentamicin | amikacin | cefotaxime | tetracycline | aztreonam |
resistance | ||
---|---|---|
lincomycin | bacitracin | oxacillin |
Biochemistry
Fattyacids
Name | Account |
---|---|
C16:1 ω7c | 32.8 |
C16:0 | 28 |
iso-C16:1 and/or C14:0 3-OH | 8.4 |
C18:1 ω7c | 16.4 |
Metyl red
-
Nitrate rdc
-
Quinones
UQ-8;MK-8
Vp test
-
Enzymology
Enzyme | Activity |
---|---|
arginine dihydrolase | - |
catalase | + |
gelatinase | - |
ornithine decarboxylase | - |
oxidase | - |
urease | - |
Taxonomy marker
AM774412
Biostraticola tofi
Create date: 02-AUG-2007
Length
1418
Topology
linear
Strandedness
double
Xref
Genomics
Submitter date: 2019/03/11 00:00 Update date: 2019/03/16 00:00
Source
DOE Joint Genome Institute
Coverage
349
Assembly status
Contig
Assembly class
haploid
Strain List
References
1
Verbarg, S., Fruhling, A., Cousin, S., Brambilla, E., Gronow, S., Lunsdorf, H., and Stackebrandt, E. Biostraticola tofi gen. nov., spec. nov., a novel member of the family Enterobacteriaceae. Curr. Microbiol. (2008) 56:603-608.[DOI:10.1007/s00284-008-9133-9]
[PMID:18324435]
2
Validation list No. 123. Int. J. Syst. Evol. Microbiol. (2008) 58:1993-1994.[DOI:10.1099/ijs.0.2008/007492-0]
[PMID:18768592]