Co-evolution of Mycobacterium tuberculosis with virulence phenotypes

Links for TDA network enrichment patterns

• TDA network enrichment patterns of the genomes of Mycobacterium tuberculosis.
• TDA network enrichment patterns of 36 virulence factors found to be co-enriched with the genomes of M. tuberculosis
1.   ESX-5 (ESAT-like secretion system)
2.   Nitrate reductase
3.   PDIM (phthiocerol dimycocerosate)
4.   ESX-2 (T7SS)
5.   Mce2
6.   MmaA4
7.   PcaA
8.   Exochelin (smegmatis)
9.   Lipid phosphatase
10.   Copper exporter
11.   Coproporphyrinogen III oxidase
12.   Probable DNA repair protein RecN (recombination protein n)
13.   Probable hydrolase
14.   Carbonic anhydrase (carbonate dehydratase) (carbonic dehydratase)
15.   Possible cyclase
16.   Probable conserved mce associated transmembrane protein
17.   Possible conserved protein cpsA
18.   Glutamate racemase
19.   Possible linoleoyl-COA desaturase (delta(6)-desaturase)
20.   Molybdopterin biosynthesis-like protein MoeZ
21.   F0F1 ATP synthase subunit A
22.   Probable oxidoreductase
23.   Probable conserved transmembrane protein
24.   Pyruvate dehydrogenase subunit E1
25.   3-ketoacyl-(acyl-carrier-protein) reductase
26.   Fused nitrate reductase
27.   Probable conserved lipoprotein lpqt
28.   Acetyl-CoA acetyltransferase
29.   Prolyl-tRNA synthetase
30.   Probable adhesion component transport ATP-binding protein ABC transporter
31.   Acyl-CoA synthetase
32.   Conserved hypothetical integral membrane protein yrbE1B
33.   Integral membrane indolylacetylinositol arabinosyltransferase emba (arabinosylindolylacetylinositol synthase)
34.   ESX-3
35.   Probable ferric uptake regulation protein furB
36.   Nucleotide-binding protein

Bulk download for TDA network enrichment patterns