General Information
- Experiment ID
- OEX000106
- Experiment Name
- retinoblastoma sequencing
- Experiment Type
- Transcriptomic
- Protocol
- Total RNA was extracted from retinoblastoma and para-tumor samples using TRIzol reagent (Invitrogen, Carlsbad, CA, USA). We confirmed RNA integrity using the 2100 Bioanalyzer (Agilent Technologies, USA) and measured RNA concentration in a Qubit 2.0 fluorometer using the Qubit RNA Assay Kit (Life Technologies, Carlsbad, CA, USA). We prepared libraries from 100 ng of total RNA using an Illumina TruSeq RNA Sample Prep Kit (San Diego, CA, USA) following the manufacturer's protocol. In total, 12 libraries were sequenced using the Illumina Hiseq platform (San Diego, CA, USA).
- Used ID
- NODEX06357842  
Experiment information
- Attributes
-
library_strategy RNA-Seq library_layout Paired library_selection cDNA mate_pair n/a platform Illumina HiSeq 2000 insertion_size 150 library_name Hg19 - Project
-
1
Project ID Project name Create Date OEP000103 Retinoblastoma samples RNA-seq 2018-02-24 - Samples
-
6
Sample ID Sample Name Organism Tissue Create Date OES002926 Para retinoblastoma normal control-1 Homo sapiens N/A 2018-02-24 OES002927 Para retinoblastoma normal control-2 Homo sapiens N/A 2018-02-24 OES002928 Para retinoblastoma normal control-3 Homo sapiens N/A 2018-02-24 OES002923 Retinoblastoma-1 Homo sapiens N/A 2018-02-24 OES002924 Retinoblastoma-2 Homo sapiens N/A 2018-02-24 OES002925 Retinoblastoma-3 Homo sapiens N/A 2018-02-24 - Runs
-
7
Run ID Run Name Sample Data Num Create Date OER009389 NODER_Peiwei_1802241429 Para retinoblastoma normal control-1 1 2018-02-24 OER009390 NODER_Peiwei_1802241430 Para retinoblastoma normal control-1 1 2018-02-24 OER009391 NODER_Peiwei_1802241430 Para retinoblastoma normal control-2 2 2018-02-24 OER009392 NODER_Peiwei_1802241430 Para retinoblastoma normal control-3 2 2018-02-24 OER009393 NODER_Peiwei_1802241431 Retinoblastoma-1 2 2018-02-24 OER009394 NODER_Peiwei_1802241431 Retinoblastoma-2 2 2018-02-24 OER009395 NODER_Peiwei_1802241431 Retinoblastoma-3 2 2018-02-24 - Analysis
-
1
Analysis ID Analysis Title Analysis Type Data Num Create Date OEZ000380 NODEZ_Peiwei_1802241432 Sequence Annotation 0 2018-02-24
Author Information
- Create Date
- 2018-02-24
- Last Modified
- 2018-12-26
- Submission
- Peiwei Chai
- Shanghai Ninth people's hospital