General Information
- Experiment ID
- OEX023080
- Experiment Name
- proteome
- Experiment Type
- Proteomic
- Protocol
- For data-independent acquisition, samples were acquired with a diaPASEF method consisting of 14 cycles, including a total of 28 mass-width windows (25 Da width, from 452 to 1152 Da) with 4 mobility windows each, making a total of 56 windows covering the ion mobility range (1/K0) from 0.76 to 1.29 V s/cm2. The acquisition time of each PASEF scan was set to 100 ms with a near 100% duty cycle, which led to a total cycle time of around 1.59 s.
Experiment information
- Attributes
-
enzyme Trypsin/P quantification Label-free [MD] instrument_type n/a experimental_method Shotgun proteomics fixed_modifications Carbamidomethyl(C) variable_modifications Oxidation(M) platform timsTOF Pro - Project
-
1
Project ID Project name Create Date OEP004110 Opposing roles of the stromal architecture surrounding and occupying tumor mass in hepatocellular carcinoma 2023-04-15 - Samples
-
30
Sample ID Sample Name Organism Tissue Create Date OES307518 C05 Homo sapiens Stroma/Tumor/Liver 2023-05-11 OES307527 C15 Homo sapiens Stroma/Tumor/Liver 2023-05-11 OES307514 C01 Homo sapiens Stroma/Tumor/Liver 2023-05-11 OES307515 C02 Homo sapiens Stroma/Tumor/Liver 2023-05-11 OES307520 C07 Homo sapiens Stroma/Tumor/Liver 2023-05-11 OES307516 C03 Homo sapiens Stroma/Tumor/Liver 2023-05-11 OES307519 C06 Homo sapiens Stroma/Tumor/Liver 2023-05-11 OES307529 C08 Homo sapiens Stroma/Tumor/Liver 2023-05-11 OES307521 C09 Homo sapiens Stroma/Tumor/Liver 2023-05-11 OES307523 C11 Homo sapiens Stroma/Tumor/Liver 2023-05-11 OES307517 C04 Homo sapiens Stroma/Tumor/Liver 2023-05-11 OES307524 C12 Homo sapiens Stroma/Tumor/Liver 2023-05-11 OES307526 C14 Homo sapiens Stroma/Tumor/Liver 2023-05-11 OES307525 C13 Homo sapiens Stroma/Tumor/Liver 2023-05-11 OES307531 N03 Homo sapiens Stroma/Tumor/Liver 2023-05-11 OES307528 N01 Homo sapiens Stroma/Tumor/Liver 2023-05-11 OES307530 N02 Homo sapiens Stroma/Tumor/Liver 2023-05-11 OES307535 N07 Homo sapiens Stroma/Tumor/Liver 2023-05-11 OES307532 N04 Homo sapiens Stroma/Tumor/Liver 2023-05-11 OES307534 N06 Homo sapiens Stroma/Tumor/Liver 2023-05-11 OES307536 N08 Homo sapiens Stroma/Tumor/Liver 2023-05-11 OES307537 N09 Homo sapiens Stroma/Tumor/Liver 2023-05-11 OES307539 N11 Homo sapiens Stroma/Tumor/Liver 2023-05-11 OES307542 N14 Homo sapiens Stroma/Tumor/Liver 2023-05-11 OES307541 N13 Homo sapiens Stroma/Tumor/Liver 2023-05-11 OES307540 N12 Homo sapiens Stroma/Tumor/Liver 2023-05-11 OES307543 N15 Homo sapiens Stroma/Tumor/Liver 2023-05-11 OES307522 C10 Homo sapiens Stroma/Tumor/Liver 2023-05-11 OES307533 N05 Homo sapiens Stroma/Tumor/Liver 2023-05-11 OES307538 N10 Homo sapiens Stroma/Tumor/Liver 2023-05-11 - Runs
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30
Run ID Run Name Sample Data Num Create Date OER395362 Proteome-C05 C05 1 2023-05-11 OER395363 Proteome-C15 C15 1 2023-05-11 OER395364 Proteome-C01 C01 1 2023-05-11 OER395365 Proteome-C02 C02 1 2023-05-11 OER395366 Proteome-C07 C07 1 2023-05-11 OER395367 Proteome-C03 C03 1 2023-05-11 OER395368 Proteome-C06 C06 1 2023-05-11 OER395369 Proteome-C08 C08 1 2023-05-11 OER395370 Proteome-C09 C09 1 2023-05-11 OER395371 Proteome-C11 C11 1 2023-05-11 OER395372 Proteome-C04 C04 1 2023-05-11 OER395373 Proteome-C12 C12 1 2023-05-11 OER395374 Proteome-C14 C14 1 2023-05-11 OER395375 Proteome-C13 C13 1 2023-05-11 OER395376 Proteome-N03 N03 1 2023-05-11 OER395377 Proteome-N01 N01 1 2023-05-11 OER395378 Proteome-N02 N02 1 2023-05-11 OER395379 Proteome-N07 N07 1 2023-05-11 OER395380 Proteome-N04 N04 1 2023-05-11 OER395381 Proteome-N06 N06 1 2023-05-11 OER395382 Proteome-N08 N08 1 2023-05-11 OER395383 Proteome-N09 N09 1 2023-05-11 OER395384 Proteome-N11 N11 1 2023-05-11 OER395385 Proteome-N14 N14 1 2023-05-11 OER395386 Proteome-N13 N13 1 2023-05-11 OER395387 Proteome-N12 N12 1 2023-05-11 OER395388 Proteome-N15 N15 1 2023-05-11 OER395389 Proteome-C10 C10 1 2023-05-11 OER395390 Proteome-N05 N05 1 2023-05-11 OER395391 Proteome-N10 N10 1 2023-05-11 - Analysis
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1
Analysis ID Analysis Title Analysis Type Data Num Create Date OEZ013907 Processed shotgun proteomic profiles Other 0 2023-04-16
Author Information
- Create Date
- 2023-04-15
- Last Modified
- 2023-12-18
- Submission
- Yifei Cheng
- Fudan University