Welcome to Spike Antigenicity for SARS-CoV-2
The platform of SAS, Spike Antigenicity for SARS-CoV-2, was initiated to deal with the latest antigenicity information for SARS-CoV-2. Connecting to Global Initiative on Sharing All Influenza Data (GISAID) database, SAS can automatically collect all Spike mutants and calculate their epitope positions, epitope regions and potential antigenic resistance. Based on above, SAS produces monitoring reports on the emerging drifted mutants, and further suggests the dynamic changes of immune-protection coverage for representative mAbs. The pre-defined epitope regions include both validated and predicted epitopes. For each queried mutant, users can manipulate the antigenic clustering tree or heatmap to visualize the antigenicity similarity between query, monthly representative S and the benchmarking S proteins. SAS may help to monitor the antigenicty change and faciliate the mAb/vaccine development.

10829134

GISAID strains

5165603

complete spikes

24493

unique variants

81

representative variants
Antigenicity monitoring (Sep 16th 2022)
T51-/Q52-/D53-/L54-/F55-/L56-/D614G (E6K ) in spike_predicted_epi_1 ( 0.55 )
M1L/F2V/V3F/L5F/V382L/D614G/P809L (JOK ) in spike_predicted_epi_10 ( 0.54 )
M1L/F2V/V3F/L5F/V382L/D614G/P809L (JOK ) in spike_predicted_epi_11 ( 0.58 )
M1L/F2V/V3F/L5F/V382L/D614G/P809L (JOK ) in spike_predicted_epi_12 ( 0.79 )
A575G/Q580R/S605F/S875F/S884F/G885C/W886G/F888L/A890P/L894F/A899V/A903G/R905S/G908V/L916F/S939F (CL4 ) in spike_predicted_epi_13 ( 0.64 )
M1L/F2V/V3F/L5F/V382L/D614G/P809L (JOK ) in spike_predicted_epi_2 ( 0.76 )
M1L/F2V/V3F/L5F/V382L/D614G/P809L (JOK ) in spike_predicted_epi_3 ( 0.48 )
M1L/F2V/V3F/L5F/V382L/D614G/P809L (JOK ) in spike_predicted_epi_4 ( 0.69 )
M1L/F2V/V3F/L5F/V382L/D614G/P809L (JOK ) in spike_predicted_epi_5 ( 0.72 )
M1L/F2V/V3F/L5F/V382L/D614G/P809L (JOK ) in spike_predicted_epi_6 ( 0.60 )
M1L/F2V/V3F/L5F/V382L/D614G/P809L (JOK ) in spike_predicted_epi_7 ( 0.46 )
M1L/F2V/V3F/L5F/V382L/D614G/P809L (JOK ) in spike_predicted_epi_8 ( 0.67 )
M1L/F2V/V3F/L5F/V382L/D614G/P809L (JOK ) in spike_predicted_epi_9 ( 0.50 )
M1L/F2V/V3F/L5F/V382L/D614G/P809L (JOK ) in spike_validated_epi_1 ( 0.51 )
T19R/G142D/E156G/F157-/R158-/D215Y/L452R/T478K/D614G/P681R/D950N/V1264L (RN5 ) in spike_validated_epi_10 ( 0.16 )
M1L/F2V/V3F/L5F/V382L/D614G/P809L (JOK ) in spike_validated_epi_11 ( 0.74 )
M1L/F2V/V3F/L5F/V382L/D614G/P809L (JOK ) in spike_validated_epi_12 ( 0.56 )
T19R/E156G/F157-/R158-/A222V/L452R/T478K/D614G/P681R/D950N/N1074S (QKF ) in spike_validated_epi_13 ( 0.25 )
S477N/A522S/D614G/N1194Y (ILI ) in spike_validated_epi_14 ( 0.25 )
T19R/T95I/G142D/E156G/F157-/R158-/L452R/T478K/Q580H/D614G/P681R/D950N (Q6J ) in spike_validated_epi_15 ( 0.18 )
M1L/F2V/V3F/L5F/V382L/D614G/P809L (JOK ) in spike_validated_epi_2 ( 0.32 )
M1L/F2V/V3F/L5F/V382L/D614G/P809L (JOK ) in spike_validated_epi_3 ( 0.38 )
M1L/F2V/V3F/L5F/V382L/D614G/P809L (JOK ) in spike_validated_epi_4 ( 0.40 )
M1L/F2V/V3F/L5F/V382L/D614G/P809L (JOK ) in spike_validated_epi_5 ( 0.73 )
M1L/F2V/V3F/L5F/V382L/D614G/P809L (JOK ) in spike_validated_epi_6 ( 0.32 )
M1L/F2V/V3F/L5F/V382L/D614G/P809L (JOK ) in spike_validated_epi_7 ( 0.42 )
T19R/G142D/E156G/F157-/R158-/A222V/L452R/T478K/Q613H/D614G/P681R/D950N (P11 ) in spike_validated_epi_8 ( 0.30 )
M1L/F2V/V3F/L5F/V382L/D614G/P809L (JOK ) in spike_validated_epi_9 ( 0.34 )
  • [1]Zhang, L., Cao, R., Mao, T., Wang, Y., Lv, D., Yang, L., Tang, Y., Zhou, M., Ling, Y., Zhang, G. et al. (2021) SAS: A Platform of Spike Antigenicity for SARS-CoV-2. 9. [Read full article]