Gene "LTA4H"
Found 5 records
Gene information
Gene symbol:
LTA4H
See related:
Ensembl: ENSG00000111144, Gene ID: 4048
Additive variants :
Detected
Genetic interaction partners
Confidence      Stringent (ε>0.16 or ε<-0.12)      Intermediate (-0.16≤ε≤-0.08 or 0.08≤ε≤0.16)      Lenient (|ε|<0.08)
Positive interactions
  • TTF2 
  • CYC1 
  • ETFDH 
  • SNX2 
  • SETD6 
  • PDXP 
  • MRI1 
  • TRMT11 
  • CERK 
  • STX2 
  • ATP7B 
  • VPS8 
  • FH 
  • EEF1G 
  • ELP3 
  • PAQR3 
  • STK16 
  • SLC36A1 
  • TGIF2 
  • CSNK2A2 
  • SFN 
  • RTF1 
  • ZFP42 
  • GALK1 
  • ANKZF1 
  • ACAA1 
  • CPT2 
  • SLC38A7 
  • PQLC2L 
  • XRCC3 
  • DRG1 
  • MARCH6 
  • CS 
  • NIF3L1 
  • FKBP7 
  • TRNAU1AP 
  • FIS1 
  • TBK1 
  • MSH6 
  • COQ7 
  • ATG9B 
  • ACOX3 
  • SLC25A32 
  • PUM1 
  • SLC25A28 
  • HFM1 
  • RPS6 
  • RAD54L 
  • GPX7 
  • XPOT 
  • BOLA3 
  • RAB5B 
  • SLC27A3 
  • MORF4L1 
  • PHB2 
  • MAPKAPK5 
  • GEN1 
  • PAQR3 
  • EXO1 
  • SNX7 
  • PGD 
  • ARL1 
  • PA2G4 
  • SNAPC4 
  • TOM1 
  • EEF2 
  • HELLS 
  • GPX7 
  • PFKFB2 
  • USP4 
Negative interactions
  • PQLC2L 
  • AGMAT 
  • RPS10 
  • SLC35B1 
  • GLIPR2 
  • WDR48 
  • SMARCB1 
  • PDIA5 
  • CFDP1 
  • RPL24 
  • YME1L1 
  • RANGRF 
  • BRD1 
  • RPS4X 
  • DDX11 
  • CLPB 
  • PPAN 
  • CWH43 
  • C2orf76 
  • RMND5B 
  • ZADH2 
  • RBKS 
  • SLC35F5 
  • RTN4IP1 
  • LIPT1 
  • CHD8 
  • RPL35 
  • DOHH 
  • USP13 
  • RPL37A 
  • ZMPSTE24 
Modifier statisitcs
Record:
Disorder:
Vriant:
Reference:
Effect type:
Expressivity(5)  
Modifier effect:
Risk factor(4) ,Altered response to leukotriene modifiers(1)  
Details:
  • Gene:
    Genomic location:
    chr12:96403989
    dbSNP ID:
    Target disease:
    Effect type:
    Expressivity 
    Modifier effect:
    Risk factor 
    Evidence:
    P=0.022 
    Effect:
    A multiple regression model, which included age and baseline hemoglobin as covariates, retained SNPs in ACVRL1, BMP6, and ADRB1 as independently contributing to pHTN risk.
    Reference:
    Title:
    Identification of genetic polymorphisms associated with risk for pulmonary hypertension in sickle cell disease.
    Species studied:
    Human
    Abstract:
    Up to 30% of adult patients with sickle cell disease (SCD) will develop pulmonary hypertension (pHTN), a complication associated with significant morbidity and mortality. To identify genetic factors that contribute to risk for pHTN in SCD, we performed association analysis with 297 single nucleotide polymorphisms (SNPs) in 49 candidate genes in patients with sickle cell anemia (Hb SS) who had been screened for pHTN by echocardiography (n = 111). Evidence of association was primarily identified for genes in the TGFbeta superfamily, including activin A receptor, type II-like 1 (ACVRL1), bone morphogenetic protein receptor 2 (BMPR2), and bone morphogenetic protein 6 (BMP6). The association of pHTN with ACVRL1 and BMPR2 corroborates the previous association of these genes with primary pHTN. Moreover, genes in the TGFbeta pathway have been independently implicated in risk for several sickle cell complications, suggesting that this gene pathway is important in overall sickle cell pathophysiology. Genetic variation in the beta-1 adrenergic receptor (ADRB1) was also associated with pHTN in our dataset. A multiple regression model, which included age and baseline hemoglobin as covariates, retained SNPs in ACVRL1, BMP6, and ADRB1 as independently contributing to pHTN risk. These findings may offer new promise for identifying patients at risk for pHTN, developing new therapeutic targets, and reducing the occurrence of this life-threatening SCD complication.
  • Gene:
    Genomic location:
    chr12:96403989
    dbSNP ID:
    Target disease:
    Sickle Cell Anemia(DOID_10923)
    Effect type:
    Expressivity 
    Modifier effect:
    Risk factor 
    Evidence:
    P=0.022 
    Effect:
    A multiple regression model, which included age and baseline hemoglobin as covariates, retained SNPs in ACVRL1, BMP6, and ADRB1 as independently contributing to pHTN risk.
    Reference:
    Title:
    Identification of genetic polymorphisms associated with risk for pulmonary hypertension in sickle cell disease.
    Species studied:
    Human
    Abstract:
    Up to 30% of adult patients with sickle cell disease (SCD) will develop pulmonary hypertension (pHTN), a complication associated with significant morbidity and mortality. To identify genetic factors that contribute to risk for pHTN in SCD, we performed association analysis with 297 single nucleotide polymorphisms (SNPs) in 49 candidate genes in patients with sickle cell anemia (Hb SS) who had been screened for pHTN by echocardiography (n = 111). Evidence of association was primarily identified for genes in the TGFbeta superfamily, including activin A receptor, type II-like 1 (ACVRL1), bone morphogenetic protein receptor 2 (BMPR2), and bone morphogenetic protein 6 (BMP6). The association of pHTN with ACVRL1 and BMPR2 corroborates the previous association of these genes with primary pHTN. Moreover, genes in the TGFbeta pathway have been independently implicated in risk for several sickle cell complications, suggesting that this gene pathway is important in overall sickle cell pathophysiology. Genetic variation in the beta-1 adrenergic receptor (ADRB1) was also associated with pHTN in our dataset. A multiple regression model, which included age and baseline hemoglobin as covariates, retained SNPs in ACVRL1, BMP6, and ADRB1 as independently contributing to pHTN risk. These findings may offer new promise for identifying patients at risk for pHTN, developing new therapeutic targets, and reducing the occurrence of this life-threatening SCD complication.
  • Variant 3:
    Gene:
    Genomic location:
    chr12:96409201
    dbSNP ID:
    Target disease:
    Effect type:
    Expressivity 
    Modifier effect:
    Risk factor 
    Evidence:
    P=0.018 
    Effect:
    A multiple regression model, which included age and baseline hemoglobin as covariates, retained SNPs in ACVRL1, BMP6, and ADRB1 as independently contributing to pHTN risk.
    Reference:
    Title:
    Identification of genetic polymorphisms associated with risk for pulmonary hypertension in sickle cell disease.
    Species studied:
    Human
    Abstract:
    Up to 30% of adult patients with sickle cell disease (SCD) will develop pulmonary hypertension (pHTN), a complication associated with significant morbidity and mortality. To identify genetic factors that contribute to risk for pHTN in SCD, we performed association analysis with 297 single nucleotide polymorphisms (SNPs) in 49 candidate genes in patients with sickle cell anemia (Hb SS) who had been screened for pHTN by echocardiography (n = 111). Evidence of association was primarily identified for genes in the TGFbeta superfamily, including activin A receptor, type II-like 1 (ACVRL1), bone morphogenetic protein receptor 2 (BMPR2), and bone morphogenetic protein 6 (BMP6). The association of pHTN with ACVRL1 and BMPR2 corroborates the previous association of these genes with primary pHTN. Moreover, genes in the TGFbeta pathway have been independently implicated in risk for several sickle cell complications, suggesting that this gene pathway is important in overall sickle cell pathophysiology. Genetic variation in the beta-1 adrenergic receptor (ADRB1) was also associated with pHTN in our dataset. A multiple regression model, which included age and baseline hemoglobin as covariates, retained SNPs in ACVRL1, BMP6, and ADRB1 as independently contributing to pHTN risk. These findings may offer new promise for identifying patients at risk for pHTN, developing new therapeutic targets, and reducing the occurrence of this life-threatening SCD complication.
  • Variant 4:
    Gene:
    Genomic location:
    chr12:96409201
    dbSNP ID:
    Target disease:
    Sickle Cell Anemia(DOID_10923)
    Effect type:
    Expressivity 
    Modifier effect:
    Risk factor 
    Evidence:
    P=0.018 
    Effect:
    A multiple regression model, which included age and baseline hemoglobin as covariates, retained SNPs in ACVRL1, BMP6, and ADRB1 as independently contributing to pHTN risk.
    Reference:
    Title:
    Identification of genetic polymorphisms associated with risk for pulmonary hypertension in sickle cell disease.
    Species studied:
    Human
    Abstract:
    Up to 30% of adult patients with sickle cell disease (SCD) will develop pulmonary hypertension (pHTN), a complication associated with significant morbidity and mortality. To identify genetic factors that contribute to risk for pHTN in SCD, we performed association analysis with 297 single nucleotide polymorphisms (SNPs) in 49 candidate genes in patients with sickle cell anemia (Hb SS) who had been screened for pHTN by echocardiography (n = 111). Evidence of association was primarily identified for genes in the TGFbeta superfamily, including activin A receptor, type II-like 1 (ACVRL1), bone morphogenetic protein receptor 2 (BMPR2), and bone morphogenetic protein 6 (BMP6). The association of pHTN with ACVRL1 and BMPR2 corroborates the previous association of these genes with primary pHTN. Moreover, genes in the TGFbeta pathway have been independently implicated in risk for several sickle cell complications, suggesting that this gene pathway is important in overall sickle cell pathophysiology. Genetic variation in the beta-1 adrenergic receptor (ADRB1) was also associated with pHTN in our dataset. A multiple regression model, which included age and baseline hemoglobin as covariates, retained SNPs in ACVRL1, BMP6, and ADRB1 as independently contributing to pHTN risk. These findings may offer new promise for identifying patients at risk for pHTN, developing new therapeutic targets, and reducing the occurrence of this life-threatening SCD complication.
  • Variant 5:
    Gene:
    Genomic location:
    chr12:96438553
    dbSNP ID:
    Target disease:
    Asthma(DOID_2841)
    Effect type:
    Expressivity 
    Modifier effect:
    Altered response to leukotriene modifiers 
    Evidence:
    From review article 
    Effect:
    Variants in ALOX5, LTA4H, LTC4S, ABCC1, CYSLTR2, and SLCO2B1 contribute to variability in response to leukotriene modifiers
    Reference:
    Title:
    Pharmacogenetics of asthma.
    Species studied:
    Human
    Abstract:
    Patient response to the asthma drug classes, bronchodilators, inhaled corticosteroids and leukotriene modifiers, are characterized by a large degree of heterogeneity, which is attributable in part to genetic variation. Herein, we review and update the pharmacogenetics and pharmaogenomics of common asthma drugs.