Gene "PCSK9"
Found 8 records
Gene information
Gene symbol:
PCSK9
See related:
Ensembl: ENSG00000169174, Gene ID: 255738
Additive variants :
Detected
Genetic interaction partners
Confidence      Stringent (ε>0.16 or ε<-0.12)      Intermediate (-0.16≤ε≤-0.08 or 0.08≤ε≤0.16)      Lenient (|ε|<0.08)
Positive interactions
  • RPS8 
  • YME1L1 
  • TOP1 
  • NSUN2 
  • ZMPSTE24 
  • FAU 
  • WDR59 
  • PRKCSH 
  • PEX5L 
  • TCEA3 
  • CSNK2A2 
  • PPAT 
  • SGTB 
  • AP3B2 
  • EEF1G 
  • PEX14 
  • MOCS3 
  • MORF4L1 
  • RPS16 
  • PTRH1 
  • TRIT1 
  • LETM1 
  • DDX11 
  • RPS21 
  • PEX13 
  • ABAT 
  • RPS27 
  • RPS6KA1 
  • PPP2CB 
  • KIAA1109 
  • CHTF18 
  • STX16-NPEPL1 
  • RPS18 
  • HELQ 
  • ARFGAP1 
  • KATNA1 
  • BECN2 
  • PGLS 
  • REV3L 
  • TRAPPC6A 
  • PPP6R3 
  • WDR45B 
  • GLRX2 
  • FIS1 
  • TIPRL 
  • USP4 
  • RBBP5 
  • ABCC6 
  • GABARAP 
  • ALG3 
  • MSH2 
  • CTPS1 
  • ATG7 
  • AP3D1 
  • PEX10 
  • TM9SF3 
  • RPS3A 
  • PSMD4 
  • MGMT 
  • ADCK1 
  • CORO2B 
  • HIST2H4B 
  • OSBP 
  • RPUSD2 
  • SLC25A28 
  • PPAN 
  • XRCC3 
  • RPS6 
  • ASNS 
  • MSRB3 
  • TSR3 
  • DDX31 
  • RPL6 
  • RPS4X 
  • OLA1 
  • METTL11B 
  • METTL18 
  • PPCDC 
  • PM20D1 
  • MAD2L1 
  • EP400 
  • ACSS3 
  • PLPP4 
  • RPL14 
  • SCYL1 
  • ERGIC1 
  • SLC26A11 
  • PGRMC2 
  • FMO5 
  • MDH2 
  • GAPDH 
  • PDP2 
  • TREH 
Negative interactions
  • MRM2 
  • MSH4 
  • CTSE 
  • BIN3 
  • TXNRD1 
  • RACK1 
  • VPS29 
  • LIPT2 
  • MAP3K2 
  • ZFP42 
  • SNX8 
  • ANKZF1 
  • MAF1 
  • PEF1 
  • RRAGA 
  • VPS35 
  • ZDHHC6 
  • ELOVL1 
  • SLC25A21 
  • BUD31 
  • GOLPH3L 
  • LSM7 
  • SORT1 
  • RPL35 
  • ISCU 
  • ABCG2 
  • ABCF3 
  • DOHH 
  • HDAC7 
  • NF1 
  • PFDN4 
  • RNASEH2A 
  • ATAD2 
  • PFKFB2 
  • VAC14 
  • TGIF2 
  • USP33 
  • GPX7 
  • ADAP2 
  • ATP7B 
  • SRF 
  • PPM1L 
  • PLAA 
  • ABHD2 
  • ALDH16A1 
  • SLC32A1 
  • GATA2 
  • NGLY1 
  • ZFP36L2 
  • WDR48 
  • TYW3 
  • TGIF2 
Modifier statisitcs
Record:
Disorder:
Vriant:
Reference:
Effect type:
Expressivity(8)  
Modifier effect:
Altered plasma levels of LDL cholesterol(4) ,Risk factor(4)  
Details:
  • Variant 1:
    Gene:
    Genomic location:
    dbSNP ID:
    Target disease:
    Effect type:
    Expressivity 
    Modifier effect:
    Risk factor 
    Evidence:
    P<0.05 
    Effect:
    Variants of PCSK9 and APOE genes explain a part of the phenotypic variability.
    Reference:
    Title:
    Effect of mutations in LDLR and PCSK9 genes on phenotypic variability in Tunisian familial hypercholesterolemia patients.
    Species studied:
    Human
    Abstract:
    BACKGROUND:Autosomal dominant hypercholesterolemia (ADH) is commonly caused by mutations in the low-density lipoprotein (LDL) receptor gene (LDLR), in the apolipoprotein B-100 gene (APOB), or in the proprotein convertase subtilisin kexine 9 gene (PCSK9). ADH subjects carrying a mutation in LDLR present highly variable plasma LDL-cholesterol (LDL-C). This variability might be due to environmental factors or the effect of some modifying genes such as PCSK9 and APOE. AIMS:We investigated the molecular basis of thirteen Tunisian ADH families and attempted to determine the impact of PCSK9 and APOE gene variations on LDL-cholesterol levels and on the variable phenotypic expression of the disease. METHODS AND RESULTS:Fifty six subjects were screened for mutations in the LDLR gene through direct sequencing. The causative mutation was found to segregate with the disease in each family and a new frameshift mutation, p.Met767CysfsX21, was identified in one family. The distribution of total- and LDL-cholesterol levels, adjusted for age and gender, among homozygous and heterozygous ADH patients varied widely. Within seven families, nine subjects presented low LDL-cholesterol levels despite carrying a mutation in the LDLR gene. To identify the molecular actors underlying this phenotypic variability, the PCSK9 gene was screened using direct sequencing and/or enzymatic restriction analysis, and the apo E genotypes were determined. A new missense variation (p.Pro174Ser) in the PCSK9 gene was identified and characterized as a new putative loss-of-function mutation. CONCLUSION:Genetic variations in PCSK9 and APOE genes could explain only part of the variability observed in the phenotypic expression in Tunisian ADH patients carrying mutations in the LDLR gene. Other genetic variants and environmental factors very probably act to fully explain this phenotypic variability.
  • Variant 2:
    Gene:
    Genomic location:
    dbSNP ID:
    Target disease:
    Effect type:
    Expressivity 
    Modifier effect:
    Altered plasma levels of LDL cholesterol 
    Evidence:
    These mutations were associated with a 28 percent reduction in mean ldl cholesterol and an 88 percent reduction in the risk of chd (p=0.008 for the reduction; hazard ratio, 0.11; 95 percent confidence interval, 0.02 to 0.81; p=0.03) 
    Effect:
    Reduce plasma levels of LDL cholesterol on the incidence of coronary events in a large population
    Reference:
    Title:
    Sequence variations in PCSK9, low LDL, and protection against coronary heart disease.
    Species studied:
    Human
    Abstract:
    A low plasma level of low-density lipoprotein (LDL) cholesterol is associated with reduced risk of coronary heart disease (CHD), but the effect of lifelong reductions in plasma LDL cholesterol is not known. We examined the effect of DNA-sequence variations that reduce plasma levels of LDL cholesterol on the incidence of coronary events in a large population.
  • Variant 3:
    Gene:
    Genomic location:
    dbSNP ID:
    Target disease:
    Effect type:
    Expressivity 
    Modifier effect:
    Altered plasma levels of LDL cholesterol 
    Evidence:
    These mutations were associated with a 28 percent reduction in mean ldl cholesterol and an 88 percent reduction in the risk of chd (p=0.008 for the reduction; hazard ratio, 0.11; 95 percent confidence interval, 0.02 to 0.81; p=0.03) 
    Effect:
    Reduce plasma levels of LDL cholesterol on the incidence of coronary events in a large population
    Reference:
    Title:
    Sequence variations in PCSK9, low LDL, and protection against coronary heart disease.
    Species studied:
    Human
    Abstract:
    A low plasma level of low-density lipoprotein (LDL) cholesterol is associated with reduced risk of coronary heart disease (CHD), but the effect of lifelong reductions in plasma LDL cholesterol is not known. We examined the effect of DNA-sequence variations that reduce plasma levels of LDL cholesterol on the incidence of coronary events in a large population.
  • Gene:
    Genomic location:
    chr1:55505604
    dbSNP ID:
    Target disease:
    Effect type:
    Expressivity 
    Modifier effect:
    Risk factor 
    Evidence:
    From review article 
    Effect:
    Mutations in PCSK9 are associated with intracellular degeneration of LDL receptor.
    Reference:
    Title:
    Current perspectives in genetic cardiovascular disorders: from basic to clinical aspects.
    Species studied:
    Human
    Abstract:
    We summarize recent advances in the clinical genetics of hypercholesterolemia, hypertrophic cardiomyopathy (HCM), and lethal arrhythmia, all of which are monogenic cardiovascular diseases being essential to understanding the heart and circulatory pathophysiology. Among the issues of hypercholesterolemia which play a pivotal role in development of vascular damages, familial hypercholesterolemia is the common genetic cardiovascular disease; in addition to identifying the gene mutation coding low-density lipoprotein receptor, lipid kinetics in autosomal recessive hypercholesterolemia as well as in proprotein convertase subtilisin/kexin 9 gene mutation were recently demonstrated. As for HCM, some gene mutations were identified to correlate with clinical manifestations. Additionally, a gene polymorphism of the renin-angiotensin system in development of heart failure was identified as a modifier gene. The lethal arrhythmias such as sudden death syndromes, QT prolongation, and Brugada syndrome were found to exhibit gene mutation coding potassium and/or sodium ion channels. Interestingly, functional analysis of these gene mutations helped to identify the role of each gene mutation in developing these cardiovascular disorders. We suggest considering the genetic mechanisms of cardiovascular diseases associated with hyperlipidemia, myocardial hypertrophy, or lethal arrhythmia in terms of not only clinical diagnosis but also understanding pathophysiology of each disease with therapeutic aspects.
  • Gene:
    Genomic location:
    chr1:55512222
    dbSNP ID:
    Target disease:
    Effect type:
    Expressivity 
    Modifier effect:
    Altered plasma levels of LDL cholesterol 
    Evidence:
    These mutations were associated with a 28 percent reduction in mean ldl cholesterol and an 88 percent reduction in the risk of chd (p=0.008 for the reduction; hazard ratio, 0.11; 95 percent confidence interval, 0.02 to 0.81; p=0.03) 
    Effect:
    Reduce plasma levels of LDL cholesterol on the incidence of coronary events in a large population
    Reference:
    Title:
    Sequence variations in PCSK9, low LDL, and protection against coronary heart disease.
    Species studied:
    Human
    Abstract:
    A low plasma level of low-density lipoprotein (LDL) cholesterol is associated with reduced risk of coronary heart disease (CHD), but the effect of lifelong reductions in plasma LDL cholesterol is not known. We examined the effect of DNA-sequence variations that reduce plasma levels of LDL cholesterol on the incidence of coronary events in a large population.
  • Gene:
    Genomic location:
    chr1:55529215
    dbSNP ID:
    Target disease:
    Effect type:
    Expressivity 
    Modifier effect:
    Altered plasma levels of LDL cholesterol 
    Evidence:
    These mutations were associated with a 28 percent reduction in mean ldl cholesterol and an 88 percent reduction in the risk of chd (p=0.008 for the reduction; hazard ratio, 0.11; 95 percent confidence interval, 0.02 to 0.81; p=0.03) 
    Effect:
    Reduce plasma levels of LDL cholesterol on the incidence of coronary events in a large population
    Reference:
    Title:
    Sequence variations in PCSK9, low LDL, and protection against coronary heart disease.
    Species studied:
    Human
    Abstract:
    A low plasma level of low-density lipoprotein (LDL) cholesterol is associated with reduced risk of coronary heart disease (CHD), but the effect of lifelong reductions in plasma LDL cholesterol is not known. We examined the effect of DNA-sequence variations that reduce plasma levels of LDL cholesterol on the incidence of coronary events in a large population.
  • Gene:
    Genomic location:
    chr1:55505647
    dbSNP ID:
    Target disease:
    Effect type:
    Expressivity 
    Modifier effect:
    Risk factor 
    Evidence:
    HR=0.5, 95% CI: 0.32 to 0.79; P=0.003 
    Effect:
    The hazard ratio for CHD among PCSK946L carriers relative to noncarriers, after ad justment for age and sex, was 0.5 (95 percent confidence interval, 0.32 to 0.79; P=0.003).
    Reference:
    Title:
    Sequence variations in PCSK9, low LDL, and protection against coronary heart disease.
    Species studied:
    Human
    Abstract:
    A low plasma level of low-density lipoprotein (LDL) cholesterol is associated with reduced risk of coronary heart disease (CHD), but the effect of lifelong reductions in plasma LDL cholesterol is not known. We examined the effect of DNA-sequence variations that reduce plasma levels of LDL cholesterol on the incidence of coronary events in a large population.
  • Gene:
    Genomic location:
    chr1:55523869
    dbSNP ID:
    Target disease:
    Effect type:
    Expressivity 
    Modifier effect:
    Risk factor 
    Evidence:
    From review article 
    Effect:
    Mutations in PCSK9 are associated with intracellular degeneration of LDL receptor.
    Reference:
    Title:
    Current perspectives in genetic cardiovascular disorders: from basic to clinical aspects.
    Species studied:
    Human
    Abstract:
    We summarize recent advances in the clinical genetics of hypercholesterolemia, hypertrophic cardiomyopathy (HCM), and lethal arrhythmia, all of which are monogenic cardiovascular diseases being essential to understanding the heart and circulatory pathophysiology. Among the issues of hypercholesterolemia which play a pivotal role in development of vascular damages, familial hypercholesterolemia is the common genetic cardiovascular disease; in addition to identifying the gene mutation coding low-density lipoprotein receptor, lipid kinetics in autosomal recessive hypercholesterolemia as well as in proprotein convertase subtilisin/kexin 9 gene mutation were recently demonstrated. As for HCM, some gene mutations were identified to correlate with clinical manifestations. Additionally, a gene polymorphism of the renin-angiotensin system in development of heart failure was identified as a modifier gene. The lethal arrhythmias such as sudden death syndromes, QT prolongation, and Brugada syndrome were found to exhibit gene mutation coding potassium and/or sodium ion channels. Interestingly, functional analysis of these gene mutations helped to identify the role of each gene mutation in developing these cardiovascular disorders. We suggest considering the genetic mechanisms of cardiovascular diseases associated with hyperlipidemia, myocardial hypertrophy, or lethal arrhythmia in terms of not only clinical diagnosis but also understanding pathophysiology of each disease with therapeutic aspects.