Gene "SOD2"
Found 4 records
Gene information
Gene symbol:
SOD2
See related:
Ensembl: ENSG00000112096, Gene ID: 6648
Additive variants :
Detected
Genetic interaction partners
Confidence      Stringent (ε>0.16 or ε<-0.12)      Intermediate (-0.16≤ε≤-0.08 or 0.08≤ε≤0.16)      Lenient (|ε|<0.08)
Positive interactions
  • RPL14 
  • YME1L1 
  • GTPBP3 
  • PDCD6IP 
  • UBE2N 
  • CTU1 
  • EPS15 
  • NGLY1 
  • CTDSPL2 
  • EP400 
  • RNASEH2A 
  • TXNDC9 
  • PEX1 
  • GCLC 
  • GALT 
  • ACER3 
  • FAAH 
  • DNM1L 
  • NPLOC4 
  • RAD52 
  • MTOR 
  • SETD6 
  • FKBP7 
  • TMEM165 
  • RAB6B 
  • LTA4H 
  • MAPK11 
  • RPL37 
  • RPS25 
  • PPIP5K1 
  • ARL14 
  • DDX31 
  • CAT 
  • SIN3A 
  • ETFA 
  • MSH4 
  • PIM3 
  • SNAPC4 
  • RPL29 
  • CTDNEP1 
  • SEC24D 
  • VDAC2 
  • NIF3L1 
  • ATG9B 
  • ZFP36L2 
  • SLC25A32 
  • FASN 
  • SLC38A7 
  • SORT1 
  • BRSK1 
  • MELK 
  • COX6B2 
  • RAB5B 
  • WDR1 
  • PPP6R3 
  • ISG20 
  • MON1B 
  • HK2 
  • AP4S1 
Negative interactions
  • ISCU 
  • UBA3 
  • BOLA3 
  • MRM2 
  • NF1 
  • NFU1 
  • ALDH1L2 
  • IDH3B 
  • SLC38A7 
  • CHAC1 
  • SFN 
  • TXNRD1 
  • RPS6 
  • PDPK1 
  • RPSA 
  • PPP6C 
  • PDHB 
  • RNF20 
  • RPL37A 
  • MAF1 
  • FH 
  • TCEA3 
  • SMARCB1 
  • PITRM1 
  • XPO5 
  • PRKG2 
  • ING3 
  • PGGHG 
  • CHMP3 
  • MPC1 
  • GID4 
  • USP14 
  • SPRYD3 
  • CYCS 
  • TMED9 
  • USP41 
  • ZMPSTE24 
  • SGPL1 
  • HIRA 
  • MOV10 
  • REXO2 
  • LSM14B 
  • CS 
  • OGG1 
  • MAEA 
  • HHATL 
  • ALLC 
  • CHN1 
  • SLC25A17 
  • RPL7 
  • FBP1 
  • RACK1 
  • ALDH1L2 
  • SLC3A1 
  • ANPEP 
  • UCHL3 
  • RPL22L1 
  • RBMX2 
  • RPLP2 
  • SLC25A1 
  • IMPDH1 
  • VAMP2 
  • RPL31 
  • PAQR3 
  • DLAT 
  • SNX8 
  • PRDX6 
  • PPCDC 
  • TGIF2 
  • MGMT 
  • WDR59 
  • GLRX2 
  • NKTR 
  • PRPSAP2 
  • RPS3A 
  • IPO9 
  • RHEB 
  • ELOVL1 
  • PCYT2 
  • TSSK3 
  • KIF6 
  • UBR3 
  • PDK2 
  • TRIP12 
  • ZDHHC18 
  • PPP3CC 
  • ME1 
  • HAO2 
  • ASNA1 
  • CS 
  • XYLB 
  • DPYSL2 
  • SLC39A14 
  • GAPDH 
  • CTNS 
Modifier statisitcs
Record:
Disorder:
Vriant:
Reference:
Effect type:
Expressivity(3) ,Penetrance(1)  
Modifier effect:
Altered incidence(1) ,Altered onset time(1) ,Altered severity(1) ,Risk factor(1)  
Details:
  • Gene:
    Genomic location:
    chr6:160113872
    dbSNP ID:
    Alias:
    SOD2:C47T, SOD2:c.47T>C, SOD2:c.47C>T
    Target disease:
    Migraine(DOID_6364)
    Effect type:
    Expressivity 
    Modifier effect:
    Risk factor 
    Evidence:
    P=0.042 
    Effect:
    Our findings suggest that SOD2 is a disease-modifier gene influencing oxidative mechanisms in MwA.
    Reference:
    Title:
    Is SOD2 Ala16Val polymorphism associated with migraine with aura phenotype
    Species studied:
    Human
    Abstract:
    Several studies suggest a role of oxidative stress in the physiopathology of migraine, particularly in the form with aura. In a case-control study, we investigated the association between migraine and superoxide dismutase 1 (SOD1) and superoxide dismutase 2 (SOD2) genes in a cohort of 490 consecutive unrelated Caucasian migraineurs (migraine with aura [MwA], n=107; migraine without aura [MwoA], n=246; chronic migraine [CM], n=137) and 246 healthy controls recruited at our Headache and Pain Unit and stored in the Interinstitutional Multidisciplinary BioBank (BioBIM). Migraine phenotype was carefully detailed using face-to-face interviews. We examined polymorphisms of SOD1 gene (A/C substitution-rs2234694) and SOD2 gene (C/T transition-rs4880-Ala16Val). The rs4880 TT (Val/Val) genotype was associated (p=0.042) with the presence of unilateral cranial autonomic symptoms (UAs) in MwA patients. We also found a mild correlation between SOD2 rs4880 genotype and the type of acute migraine treatment (p=0.048) in MwA patients. Our findings suggest that SOD2 is a disease-modifier gene influencing oxidative mechanisms in MwA. These observations lead to the hypothesis that SOD2 polymorphism may cause a defective control of the oxidative phenomena linked to cortical spreading depression, the neurophysiological hallmark of migraine aura, causing an overstimulation of trigeminal neurons and UAs triggering.
  • Gene:
    Genomic location:
    chr6:160113872
    dbSNP ID:
    Alias:
    SOD2:C47T, SOD2:c.47T>C, SOD2:c.47C>T
    Target disease:
    Effect type:
    Expressivity 
    Modifier effect:
    Altered severity 
    Evidence:
    P=0.038 
    Effect:
    Associated with the development NAFLD or disease severity.
    Reference:
    Title:
    Genetic analysis of nonalcoholic fatty liver disease within a Caribbean-Hispanic population.
    Species studied:
    Human
    Abstract:
    We explored potential genetic risk factors implicated in nonalcoholic fatty liver disease (NAFLD) within a Caribbean-Hispanic population in New York City. A total of 316 individuals including 40 subjects with biopsy-proven NAFLD, 24 ethnically matched non-NAFLD controls, and a 252 ethnically mixed random sampling of Bronx County, New York were analyzed. Genotype analysis was performed to determine allelic frequencies of 74 known single-nucleotide polymorphisms (SNPs) associated with NAFLD risk based on previous genome-wide association study (GWAS) and candidate gene studies. Additionally, the entire coding region of PNPLA3, a gene showing the strongest association to NAFLD was subjected to Sanger sequencing. Results suggest that both rare and common DNA variations in PNPLA3 and SAMM50 may be correlated with NAFLD in this small population study, while common DNA variations in CHUK and ERLIN1, may have a protective interaction. Common SNPs in ENPP1 and ABCC2 have suggestive association with fatty liver, but with less compelling significance. In conclusion, Hispanic patients of Caribbean ancestry may have different interactions with NAFLD genetic modifiers; therefore, further investigation with a larger sample size, into this Caribbean-Hispanic population is warranted.
  • Gene:
    Genomic location:
    chr6:160113872
    dbSNP ID:
    Alias:
    SOD2:C47T, SOD2:c.47T>C, SOD2:c.47C>T
    Target disease:
    Effect type:
    Penetrance 
    Modifier effect:
    Altered incidence 
    Evidence:
    From review article 
    Effect:
    Japanese patients with NASH had a higher incidence of the T/T SOD2 genotype
    Reference:
    Title:
    Genetic predisposition in NAFLD and NASH: impact on severity of liver disease and response to treatment.
    Species studied:
    Human
    Abstract:
    Liver fat deposition related to systemic insulin resistance defines non-alcoholic fatty liver disease (NAFLD) which, when associated with oxidative hepatocellular damage, inflammation, and activation of fibrogenesis, i.e. non-alcoholic steatohepatitis (NASH), can progress towards cirrhosis and hepatocellular carcinoma. Due to the epidemic of obesity, NAFLD is now the most frequent liver disease and the leading cause of altered liver enzymes in Western countries. Epidemiological, familial, and twin studies provide evidence for an element of heritability of NAFLD. Genetic modifiers of disease severity and progression have been identified through genome-wide association studies. These include the Patatin-like phosholipase domain-containing 3 (PNPLA3) gene variant I148M as a major determinant of inter-individual and ethnicity-related differences in hepatic fat content independent of insulin resistance and serum lipid concentration. Association studies confirm that the I148M polymorphism is also a strong modifier of NASH and progressive hepatic injury. Furthermore, a few large multicentre case-control studies have demonstrated a role for genetic variants implicated in insulin signalling, oxidative stress, and fibrogenesis in the progression of NAFLD towards fibrosing NASH, and confirm that hepatocellular fat accumulation and insulin resistance are key operative mechanisms closely involved in the progression of liver damage. It is now important to explore the molecular mechanisms underlying these associations between gene variants and progressive liver disease, and to evaluate their impact on the response to available therapies. It is hoped that this knowledge will offer further insights into pathogenesis, suggest novel therapeutic targets, and could help guide physicians towards individualised therapy that improves clinical outcome.
  • Gene:
    Genomic location:
    chr6:160113872
    dbSNP ID:
    Alias:
    SOD2:C47T, SOD2:c.47T>C, SOD2:c.47C>T
    Target disease:
    Effect type:
    Expressivity 
    Modifier effect:
    Altered onset time 
    Evidence:
    From review article 
    Effect:
    CAT,SOD2,GPX1 mutated alleles, indicating a cumulative effect on the time of PXE onset
    Reference:
    Title:
    New insights into the pathogenesis of pseudoxanthoma elasticum and related soft tissue calcification disorders by identifying genetic interactions and modifiers.
    Species studied:
    Human
    Abstract:
    Screening of the adenosine triphosphate binding cassette transporter protein subfamily C member 6 gene (ABCC6) in pseudoxanthoma elasticum (PXE) revealed a mutation detection rate of approximately 87%. Although 25% of the unidentified disease alleles underlie deletions/insertions, there remain several PXE patients with no clear genotype. The recent identification of PXE-related diseases and the high intra-familiar and inter-individual clinical variability of PXE led to the assumption that secondary genetic co-factors exist. Here, we summarize current knowledge of the genetics underlying PXE and PXE-related disorders based on human and animal studies. Furthermore, we discuss the role of genetic interactions and modifier genes in PXE and PXE-related diseases characterized by soft tissue calcification.