Variant "IL6:c.-174C>G"
Search results: 8 records
Variant information
Gene:
IL6 
Variant:
IL6:c.-174C>G 
Genomic location:
chr7:22766645(hg19) 
HGVS:
SO Term RefSeq
protein_coding NM_000600.4:c.-237C>G
protein_coding NM_001318095.1:c.-1685C>G
pseudogene NR_131935.1:n.54-321G>C
Alias:
IL6:c.-237C>G, IL6:c.-174G>C, IL6:-174G/C, IL6:c.174G>C 
dbSNP ID:
GWAS trait:
Modifier statisitcs
Record:
Disorder:
Reference:
Effect type:
Expressivity(8)  
Modifier effect:
Risk factor(5) ,Altered severity(3)  
Details:
  • Target disease:
    Alzheimer's Disease (DOID_10652)
    Effect type:
    Expressivity 
    Modifier effect:
    Risk factor 
    Evidence:
    Odds ratio (OR) = 0.70, 95% confidence interval (CI) = 0.54-0.90 
    Effect:
    Genotype CC of IL-6 -174 G/C could decrease the risk of AD
    Alias in reference:
    IL6:-174G/C
    Reference:
    Title:
    Association between polymorphism in the promoter region of Interleukin 6 (-174 G/C) and risk of Alzheimer's disease: a meta-analysis.
    Species studied:
    Human
    Abstract:
    Studies of the relationship between Alzheimer's disease (AD) and polymorphism in the promoter region of Interleukin 6 (IL-6) -174 G/C have reported inconsistent results. To assess the association between IL-6 -174 G/C promoter polymorphism and AD risk, a meta-analysis containing 3,101 AD cases and 3,860 controls from 18 case-control studies was performed. There were 16 studies involving Europeans and 2 studies involving non-Europeans. The combined results showed significant differences in recessive model [CC versus GC + GG, odds ratio (OR) = 0.70, 95% confidence interval (CI) = 0.54-0.90] and heterozygote comparison (CC versus GC, OR = 0.76, 95% CI = 0.60-0.96) on the basis of all studies. On subgroup analysis by ethnicity, similarly significant differences in recessive model (CC versus GC + GG) were found in both Europeans and non-Europeans, but significant difference in heterozygote comparison (CC versus GC) was found only in non-Europeans. In conclusion, there were statistically significant differences in genotype distribution of IL-6 -174 G/C between AD cases and controls in recessive model (CC versus GC + GG). Genotype CC of IL-6 -174 G/C could decrease the risk of AD. Further studies with large sample size, especially in subgroup analysis, should be done.
  • Target disease:
    Alzheimer's Disease (DOID_10652)
    Effect type:
    Expressivity 
    Modifier effect:
    Risk factor 
    Evidence:
    OR=0.65, 95% CI=0.52-0.82 
    Effect:
    Genotype CC of IL-6-174 G/C and genotype GG plus GC of IL-6-572 C/G could decrease the risk of AD.
    Alias in reference:
    IL6:-174G/C
    Reference:
    Title:
    IL-6-174 G/C and -572 C/G polymorphisms and risk of Alzheimer's disease.
    Species studied:
    Human
    Abstract:
    Associations between interleukin 6 (IL-6) polymorphisms and Alzheimer's disease (AD) remain controversial and ambiguous. The aim of this meta-analysis is to explore more precise estimations for the relationship between IL-6-174 G/C and -572 C/G polymorphisms and risk for AD. Electronic searches for all publications in databases PubMed and EMBASE were conducted on the associations between IL-6 polymorphisms and risk for AD until January 2012. Odds ratio (OR) and 95% confidence intervals (CIs) were calculated using fixed and random effects models. Twenty-seven studies were included with a total of 19,135 individuals, involving 6,632 AD patients and 12,503 controls. For IL-6-174 G/C polymorphism, the combined results showed significant differences in recessive model (CC vs. CG+GG: OR=0.65, 95%CI=0.52-0.82). As regards IL-6-572 C/G polymorphism, significant associations were shown in dominant model (CG+GG vs. CC: OR=0.73, 95% CI=0.62-0.86) and in additive model (GG vs. CC, OR=0.66, 95% CI=0.46-0.96). In conclusion, genotype CC of IL-6-174 G/C and genotype GG plus GC of IL-6-572 C/G could decrease the risk of AD.
  • Target disease:
    Gaucher's Disease (DOID_1926)
    Effect type:
    Expressivity 
    Modifier effect:
    Altered severity 
    Evidence:
    P<0.05 
    Effect:
    The C/C genotype may be associated with a milder Gaucher phenotype, and may serve as a mitigating genetic modifier.
    Alias in reference:
    IL6:c.174G>C
    Reference:
    Title:
    The interleukin-6 promoter polymorphism in Gaucher disease: a new modifier gene
    Species studied:
    Human
    Abstract:
    Individuals with Gaucher disease vary significantly with regard to degree of bone disease, but there are no predictive markers for severity of skeletal involvement.
  • Target disease:
    Effect type:
    Expressivity 
    Modifier effect:
    Altered severity 
    Evidence:
    From review article 
    Effect:
    The IL-6 -174C variant was significantly more prevalent in NAFLD than in healthy subjects, was associated with increased fasting insulin and HOMA-IR
    Alias in reference:
    IL6:-174G/C
    Reference:
    Title:
    Genetic predisposition in NAFLD and NASH: impact on severity of liver disease and response to treatment.
    Species studied:
    Human
    Abstract:
    Liver fat deposition related to systemic insulin resistance defines non-alcoholic fatty liver disease (NAFLD) which, when associated with oxidative hepatocellular damage, inflammation, and activation of fibrogenesis, i.e. non-alcoholic steatohepatitis (NASH), can progress towards cirrhosis and hepatocellular carcinoma. Due to the epidemic of obesity, NAFLD is now the most frequent liver disease and the leading cause of altered liver enzymes in Western countries. Epidemiological, familial, and twin studies provide evidence for an element of heritability of NAFLD. Genetic modifiers of disease severity and progression have been identified through genome-wide association studies. These include the Patatin-like phosholipase domain-containing 3 (PNPLA3) gene variant I148M as a major determinant of inter-individual and ethnicity-related differences in hepatic fat content independent of insulin resistance and serum lipid concentration. Association studies confirm that the I148M polymorphism is also a strong modifier of NASH and progressive hepatic injury. Furthermore, a few large multicentre case-control studies have demonstrated a role for genetic variants implicated in insulin signalling, oxidative stress, and fibrogenesis in the progression of NAFLD towards fibrosing NASH, and confirm that hepatocellular fat accumulation and insulin resistance are key operative mechanisms closely involved in the progression of liver damage. It is now important to explore the molecular mechanisms underlying these associations between gene variants and progressive liver disease, and to evaluate their impact on the response to available therapies. It is hoped that this knowledge will offer further insights into pathogenesis, suggest novel therapeutic targets, and could help guide physicians towards individualised therapy that improves clinical outcome.
  • Target disease:
    Effect type:
    Expressivity 
    Modifier effect:
    Altered severity 
    Evidence:
    P=<0.01 
    Effect:
    Associated with the development NAFLD or disease severity.
    Alias in reference:
    IL6:c.-237C>G
    Reference:
    Title:
    Genetic analysis of nonalcoholic fatty liver disease within a Caribbean-Hispanic population.
    Species studied:
    Human
    Abstract:
    We explored potential genetic risk factors implicated in nonalcoholic fatty liver disease (NAFLD) within a Caribbean-Hispanic population in New York City. A total of 316 individuals including 40 subjects with biopsy-proven NAFLD, 24 ethnically matched non-NAFLD controls, and a 252 ethnically mixed random sampling of Bronx County, New York were analyzed. Genotype analysis was performed to determine allelic frequencies of 74 known single-nucleotide polymorphisms (SNPs) associated with NAFLD risk based on previous genome-wide association study (GWAS) and candidate gene studies. Additionally, the entire coding region of PNPLA3, a gene showing the strongest association to NAFLD was subjected to Sanger sequencing. Results suggest that both rare and common DNA variations in PNPLA3 and SAMM50 may be correlated with NAFLD in this small population study, while common DNA variations in CHUK and ERLIN1, may have a protective interaction. Common SNPs in ENPP1 and ABCC2 have suggestive association with fatty liver, but with less compelling significance. In conclusion, Hispanic patients of Caribbean ancestry may have different interactions with NAFLD genetic modifiers; therefore, further investigation with a larger sample size, into this Caribbean-Hispanic population is warranted.
  • Target disease:
    Effect type:
    Expressivity 
    Modifier effect:
    Risk factor 
    Evidence:
    OR=3.750, 95% CI:1.800-7.813, P<0.001 
    Effect:
    IL-6-174G>C SNP is significantly associated with increased RA risk in overall, and specifically in Asian population
    Alias in reference:
    IL6:-174G/C
    Reference:
    Title:
    Interleukin-6-174G>C (rs1800795) polymorphism distribution and its association with rheumatoid arthritis: A case-control study and meta-analysis.
    Species studied:
    Human
    Abstract:
    The association of interleukin-6 (IL-6)-174G>C (rs1800795) single nucleotide polymorphism (SNP) with the risk of acquiring rheumatoid arthritis (RA) is a relevant issue because of conflicting and consensus lacking reports published in literature. We investigated IL-6-174G>C promoter polymorphism in 34 RA patients, attending a tertiary care hospital in north India. We also performed a meta-analysis, of the previously published studies reporting this genetic relationship, in overall population, and independently in Asian and Caucasian ethnicities to further elucidate this association. A total of 13 studies, including the current one, involving 3291 RA cases and 3812 controls were analyzed. Out of the 13 studies, 6 were from Asian, 6 from Caucasian and 1 from a mixed population. Our case-control study showed significant association of IL-6-174G>C SNP with increased RA risk: allelic (OR=3.750, 95% CI=1.800-7.813, p<0.001); dominant (OR=2.800, 95% CI=1.167-6.721, p=0.021); and recessive (OR=36.72, 95% CI=2.004-672.7, p=0.015). The meta-analysis revealed the increased RA risk associated with IL-6-174G>C SNP in overall population: allelic (OR=1.650, 95% CI=1.169-2.329, p=0.004); homozygous (OR=1.380, 95% CI=0.906-2.101, p=0.133); heterozygous (OR=1.559, 95% CI=1.001-2.428, p=0.049); dominant (OR=1.663, 95% CI=1.078-2.567, p=0.022); and recessive (OR=1.366, 95% CI=0.964-1.935, p=0.079). Subgroup analysis also showed this polymorphism to be associated with increased RA risk in Asian population: allelic (OR=3.724, 95% CI=1.361-10.190, p=0.010); dominant (OR=3.823, 95% CI=1.320-11.074, p=0.013); and recessive (OR=4.357, 95% CI=1.634-11.623, p=0.003), but not in Caucasian population. This meta-analysis shows that IL-6-174G>C SNP is significantly associated with increased RA risk in overall, and specifically in Asian population.
  • Target disease:
    Sickle Cell Anemia (DOID_10923)
    Effect type:
    Expressivity 
    Modifier effect:
    Risk factor 
    Evidence:
    P=0.03 
    Effect:
    IL-1β and IL-6 gene SNPs are associated with SCA complications among Brazilian patients and may act as genetic predictors of SCA clinical heterogeneity.
    Alias in reference:
    IL6:c.-174G>C
    Reference:
    Title:
    Interleukin-1β and interleukin-6 gene polymorphisms are associated with manifestations of sickle cell anemia.
    Species studied:
    Human
    Abstract:
    Sickle cell anemia (SCA), a disorder characterized by both acute and chronic inflammation, exhibits substantial phenotypic variability. Interleukin-1 beta (IL-1β) and IL-6 are important in acute and chronic diseases, and their single nucleotide polymorphisms (SNPs) have been considered as predictors of prognosis in several inflammatory conditions. This study aims at exploring possible association of IL-1β and IL-6 SNPs as potential genetic modifiers and or predictors of SCA clinical and laboratory phenotypes. This cross-sectional study involved 107 SCA patients and 110 age, sex and ethnicity-matched healthy individuals. The SNPs were identified by PCR-RFLP for IL-1β (-511C>T and +3954C>T) and IL-6 (-597G>A and -174G>C) genes. Associations between these SNPs and the clinical and laboratory profiles of patients with SCA were then determined. Allelic and genotypic frequencies of IL-1β and IL-6 SNPs between patients with SCA and controls were similar and followed HWE. IL-1β +3954C>T SNP was associated with increased risk of osteonecrosis, elevated pulmonary arterial pressure and lower absolute reticulocyte count, while IL-6 -597G>A was associated with higher likelihood of retinopathy and leg ulcer. These data indicate that IL-1β and IL-6 gene SNPs are associated with SCA complications among Brazilian patients and may act as genetic predictors of SCA clinical heterogeneity.
  • Target disease:
    Effect type:
    Expressivity 
    Modifier effect:
    Risk factor 
    Evidence:
    17.68-fold (95% CI: 3.57- to 87.66-fold) 
    Effect:
    The CC genotype showed a more than 5-fold increased risk of developing T2DM compared with the remaining genotypes
    Alias in reference:
    IL6:c.-174C>G
    Reference:
    Title:
    Body mass index and C-174G interleukin-6 promoter polymorphism interact in predicting type 2 diabetes.
    Species studied:
    Human
    Abstract:
    Increased levels of IL-6 add further risk to the impact of obesity in respect to the development of type 2 diabetes mellitus (T2DM). A C-174G polymorphism within the IL-6 promoter region was shown to influence transcription rate of IL-6. We made use of a nested case-control study within the European Prospective Investigation into Cancer and Nutrition-Potsdam cohort of 27,548 individuals, selecting 188 T2DM cases and 376 controls to investigate this polymorphism in respect to development of T2DM. This polymorphism was found to modify the correlation between body mass index (BMI) and IL-6 by showing a much stronger increase of IL-6 at increased BMI for CC genotypes compared with GG genotypes. Interestingly, C-174G polymorphism was found to be an effect modifier for the impact of BMI regarding T2DM. Whereas BMI greater than or equal to 28 kg/m(2) increased the risk of T2DM 3.44-fold [95% confidence interval (CI), 1.34- to 8.24-fold] for GG genotypes and 2.94-fold (95% CI, 1.56- to 5.56-fold) for GC genotypes, we found a 17.68-fold (95% CI, 3.57- to 87.66-fold) increase in risk for CC genotypes. In conclusion, obese individuals with BMI greater than or equal to 28 kg/m(2) carrying the CC genotype showed a more than 5-fold increased risk of developing T2DM compared with the remaining genotypes and, hence, might profit most from weight reduction.