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病毒基因组
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基因组编号 毒株名称 引用编号 病毒类型 物种名称 采样国家 采样时间 宿主 序列长度 发布时间 分离来源 物种ID 种名 属名 科名 数据源 采样单位 采样地址 提交者 提交者单位 覆盖度 有效碱基数量 有效碱基百分比
OEAV210203 SARS-CoV-2/environment/ITA/3233/2020 ORF1ab polyprotein, 3'-to-5' exonuclease region, (ORF1ab) gene MT373157 RNA viruses Severe acute respiratory syndrome coronavirus 2 Italy 2020-02-28 wastewater metagenome 287 2020-06-02 raw sewage 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank La Rosa,G., Iaconelli,M., Mancini,P., Bonanno Ferraro,G., Veneri,C., Bonadonna,L., Lucentini,L. and Suffredini,E. Department of Food Safety 287 100.00
OEAV210204 SARS-CoV-2/environment/ITA/3243/2020 ORF1ab polyprotein, 3'-to-5' exonuclease region, (ORF1ab) gene MT373158 RNA viruses Severe acute respiratory syndrome coronavirus 2 Italy 2020-02-28 wastewater metagenome 287 2020-06-02 raw sewage 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank La Rosa,G., Iaconelli,M., Mancini,P., Bonanno Ferraro,G., Veneri,C., Bonadonna,L., Lucentini,L. and Suffredini,E. Department of Food Safety 287 100.00
OEAV210205 SARS-CoV-2/environment/ITA/3243/2020 surface glycoprotein (S) gene MT373162 RNA viruses Severe acute respiratory syndrome coronavirus 2 Italy 2020-02-28 wastewater metagenome 469 2020-06-02 raw sewage 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank La Rosa,G., Iaconelli,M., Mancini,P., Bonanno Ferraro,G., Veneri,C., Bonadonna,L., Lucentini,L. and Suffredini,E. Department of Food Safety 469 100.00
OEAV210206 SARS-CoV-2/environment/ITA/3267/2020 ORF1ab polyprotein, 3'-to-5' exonuclease region, (ORF1ab) gene MT373156 RNA viruses Severe acute respiratory syndrome coronavirus 2 Italy 2020-03-30 wastewater metagenome 287 2020-06-02 raw sewage 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank La Rosa,G., Iaconelli,M., Mancini,P., Bonanno Ferraro,G., Veneri,C., Bonadonna,L., Lucentini,L. and Suffredini,E. Department of Food Safety 287 100.00
OEAV210207 SARS-CoV-2/environment/ITA/3268/2020 ORF1ab polyprotein, 3'-to-5' exonuclease region, (ORF1ab) gene MT373159 RNA viruses Severe acute respiratory syndrome coronavirus 2 Italy 2020-03-30 wastewater metagenome 287 2020-06-02 raw sewage 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank La Rosa,G., Iaconelli,M., Mancini,P., Bonanno Ferraro,G., Veneri,C., Bonadonna,L., Lucentini,L. and Suffredini,E. Department of Food Safety 287 100.00
OEAV210208 SARS-CoV-2/environment/ITA/3269/2020 ORF1ab polyprotein, 3'-to-5' exonuclease region, (ORF1ab) gene MT373160 RNA viruses Severe acute respiratory syndrome coronavirus 2 Italy 2020-04-30 wastewater metagenome 287 2020-06-02 raw sewage 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank La Rosa,G., Iaconelli,M., Mancini,P., Bonanno Ferraro,G., Veneri,C., Bonadonna,L., Lucentini,L. and Suffredini,E. Department of Food Safety 287 100.00
OEAV210209 SARS-CoV-2/environment/ITA/3270/2020 ORF1ab polyprotein, 3'-to-5' exonuclease region, (ORF1ab) gene MT373161 RNA viruses Severe acute respiratory syndrome coronavirus 2 Italy 2020-04-30 wastewater metagenome 287 2020-06-02 raw sewage 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank La Rosa,G., Iaconelli,M., Mancini,P., Bonanno Ferraro,G., Veneri,C., Bonadonna,L., Lucentini,L. and Suffredini,E. Department of Food Safety 287 100.00
OEAV210210 SARS-CoV-2/environment/ITA/3270/2020 surface glycoprotein (S) gene MT373163 RNA viruses Severe acute respiratory syndrome coronavirus 2 Italy 2020-04-30 wastewater metagenome 469 2020-06-02 raw sewage 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank La Rosa,G., Iaconelli,M., Mancini,P., Bonanno Ferraro,G., Veneri,C., Bonadonna,L., Lucentini,L. and Suffredini,E. Department of Food Safety 469 100.00
OEAV213092 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/Environment/USA/UF-20/2020 MT670008 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2020-04-13 air metagenome 29894 2020-06-26 Air sample 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Lednicky,J.A., Wu,C.-Y. and Morris,J.G. Environmental and Global Health, University of Florida, Gainesville 29894 100.00
OEAV213093 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/Homosapiens/BGD/BCSIR_NILMRC_118a/2020 MT731653 RNA viruses Severe acute respiratory syndrome coronavirus 2 Bangladesh 2020-06-18 air metagenome 29903 2020-07-08 Air sample 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Mohammad Mahmud,A.S., Uzzaman,M.S., Osman,E., Habib,M.A., Akter,S., Banu,T.A., Sarkar,M.M.H., Goswami,B., Jahan,I., Hossain,M.S., Nafisa,T., Molla,M.M.A., Yeasmin,M., Ghosh,A.K., Shamsuzzaman,A.K.M., Al Din,S.M.S., Ray,U.C., Sajib,S.A., Siddike,S. and Khan,M.S. Genomic Research Lab, Bangladesh Council of Scientific and Industrial Research 29903 100.00
OEAV242539 SARS-CoV-2/environment/CHN/Yantai/2020 ORF1ab polyprotein (ORF1ab) and ORF1a polyprotein (ORF1ab) genes MT911471 RNA viruses Severe acute respiratory syndrome coronavirus 2 China 2020-08-14 food contamination metagenome 1612 2020-08-21 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Jiang,X., Yao,M., Zhang,Y., Li,Y. and Wang,J. Prevention and Control of Viral Infectious Diseases, Shandong Provincial Centers for Disease Control and Prevention 1612 100.00
OEAV242540 SARS-CoV-2/environment/CHN/Yantai/2020 ORF1ab polyprotein (ORF1ab) gene MT911469 RNA viruses Severe acute respiratory syndrome coronavirus 2 China 2020-08-14 food contamination metagenome 1215 2020-08-21 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Jiang,X., Yao,M., Zhang,Y., Li,Y. and Wang,J. Prevention and Control of Viral Infectious Diseases, Shandong Provincial Centers for Disease Control and Prevention 1215 100.00
OEAV242541 SARS-CoV-2/environment/CHN/Yantai/2020 ORF8 protein (ORF8) and nucleocapsid phosphoprotein (N) genes MT911470 RNA viruses Severe acute respiratory syndrome coronavirus 2 China 2020-08-14 food contamination metagenome 1319 2020-08-21 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Jiang,X., Yao,M., Zhang,Y., Li,Y. and Wang,J. Prevention and Control of Viral Infectious Diseases, Shandong Provincial Centers for Disease Control and Prevention 1319 100.00
OEAV242542 SARS-CoV-2/environment/CHN/Yantai/2020 envelope protein (E) gene, partial cds; membrane glycoprotein (M) and ORF6 protein (ORF6) genes, complete cds; and ORF7a protein (ORF7a) gene MT911467 RNA viruses Severe acute respiratory syndrome coronavirus 2 China 2020-08-14 food contamination metagenome 1324 2020-08-21 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Jiang,X., Yao,M., Zhang,Y., Li,Y. and Wang,J. Prevention and Control of Viral Infectious Diseases, Shandong Provincial Centers for Disease Control and Prevention 1324 100.00
OEAV242543 SARS-CoV-2/environment/CHN/Yantai/2020 surface glycoprotein (S) and ORF3a protein (ORF3a) genes MT911468 RNA viruses Severe acute respiratory syndrome coronavirus 2 China 2020-08-14 food contamination metagenome 1868 2020-08-21 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Jiang,X., Yao,M., Zhang,Y., Li,Y. and Wang,J. Prevention and Control of Viral Infectious Diseases, Shandong Provincial Centers for Disease Control and Prevention 1868 100.00
OEAV251432 SARS-CoV-2/environment/ITA/3232/2020 ORF1ab polyprotein, 3'-to-5' exonuclease region, (ORF1ab) gene MT843230 RNA viruses Severe acute respiratory syndrome coronavirus 2 Italy 2020-02-19 wastewater metagenome 287 2020-08-28 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank La Rosa,G., Mancini,P., Bonanno Ferraro,G., Veneri,C., Iaconelli,M., Bonadonna,L., Lucentini,L. and Suffredini,E. Food Safety 287 100.00
OEAV251433 SARS-CoV-2/environment/ITA/3234/2020 ORF1ab polyprotein, 3'-to-5' exonuclease region, (ORF1ab) gene MT843231 RNA viruses Severe acute respiratory syndrome coronavirus 2 Italy 2020-02-26 wastewater metagenome 287 2020-08-28 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank La Rosa,G., Mancini,P., Bonanno Ferraro,G., Veneri,C., Iaconelli,M., Bonadonna,L., Lucentini,L. and Suffredini,E. Food Safety 287 100.00
OEAV251437 SARS-CoV-2/environment/ITA/3333/2019 ORF1ab polyprotein, 3'-to-5' exonuclease region, (ORF1ab) gene MT843235 RNA viruses Severe acute respiratory syndrome coronavirus 2 Italy 2019-12-18 wastewater metagenome 287 2020-08-28 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank La Rosa,G., Mancini,P., Bonanno Ferraro,G., Veneri,C., Iaconelli,M., Bonadonna,L., Lucentini,L. and Suffredini,E. Food Safety 287 100.00
OEAV251441 SARS-CoV-2/environment/ITA/3349/2020 ORF1ab polyprotein, 3'-to-5' exonuclease region, (ORF1ab) gene MT843239 RNA viruses Severe acute respiratory syndrome coronavirus 2 Italy 2020-02-26 wastewater metagenome 287 2020-08-28 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank La Rosa,G., Mancini,P., Bonanno Ferraro,G., Veneri,C., Iaconelli,M., Bonadonna,L., Lucentini,L. and Suffredini,E. Food Safety 287 100.00
OEAV251442 SARS-CoV-2/environment/ITA/3376/2020 ORF1ab polyprotein, 3'-to-5' exonuclease region, (ORF1ab) gene MT843240 RNA viruses Severe acute respiratory syndrome coronavirus 2 Italy 2020-01-29 wastewater metagenome 287 2020-08-28 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank La Rosa,G., Mancini,P., Bonanno Ferraro,G., Veneri,C., Iaconelli,M., Bonadonna,L., Lucentini,L. and Suffredini,E. Food Safety 287 100.00
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