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ID Convertor
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Blast
Search by BLAST in FASTA format
Example
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Algorithm Parameters:
Species
ALL
Homo sapiens
Mus musculus
Rattus norvegicus
Task
blastn
blastn-short
dc-megablast
megablast
vecscreen
Expect
0.0001
0.001
1
10
100
1000
Max target sequences
10
50
100
250
Match/Mismatch Score
1,-2
1,-3
1,-4
2,-3
4,-5
1,-1
Gap Costs
Existence:5 Extension:2
Existence:2 Extension:2
Existence:1 Extension:2
Existence:0 Extension:2
Existence:3 Extension:1
Existence:2 Extension:1
Existence:1 Extension:1
Alignment view
Pairwise
query-anchored showing identities
query-anchored no identities
flat query-anchored, show identities
flat master-slave without identities
query-anchored no identities and blunt ends
flat query-anchored, no identities and blunt ends
XML Blast output
tabular
tabular with comment lines
Word Size
4
5
6
7
8
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