dbDEMC

A Database of Differentially Expressed miRNAs in Human Cancers

2587

microRNAs

36

Cancer Types

99

Cancer Subtypes

209

Expression datasets

436

Experiments

22687

Sample Size

Welcome to dbDEMC

dbDEMC (database of Differentially Expressed MiRNAs in human Cancers) is an integrated database that designed to store and display differentially expressed microRNAs (miRNAs) in human cancers detected by high-throughput methods. In this updated version of dbDEMC, a total of 209 newly published data sets were collected from Gene Expression Omnibus (GEO) and The Cancer Genome Atlas (TCGA). The limma package embedded in R (http://www.r-project.org/) was used to screen the differentially expressed miRNAs from different types of experiments, which include the cancer versus normal comparison, cancer subtypes comparison, cancer grade comparision, cancer outcome comparision, blood sample comparision, respectively. The current version contains 2587 differentially expressed miRNAs in 36 cancer types, curated from 436 experiments. An easy-to-use interface was constructed to facilitate the query and browse the results in the database. In addition, an enhanced miRNA page is provide to demonstrate the basic miRNA description, expression profiles across multiple caners in each analysis type, related analysis experiments and results from low throughput validation assays. For a set of miRNAs and multiple cancer types, differential expression profile can be visualized in a heatmap to explore the difference and similarity between cancers. We try to make dbDEMC a valuable resource to facilitate cancer research and contribute to miRNA related biomarker discovery for cancer.

Citation

[1]Zhen Yang, Liangcai Wu, Anqiang Wang, et al. "dbDEMC 2.0: updated database of differentially expressed miRNAs in human cancers". Nucleic Acids Research. 2017; 45(D1):D812-D818.