Dokdonella koreensis Yoon et al. 2006
General information
Name
Dokdonella koreensis
Valid publication
2006
Nomenclature type
DS-123;KCTC 12396
;DSM 17203
Etymology
N.L. fem. adj. <i>koreensis</i>, pertaining to Korea, where Dokdo is located.
Ecology
GPS
37°14'12" N 131°52'07" E
Source
isolated from soil collected from Dokdo island located at the edge of the East Sea, Korea.
Morphology
Cells are non-spore-forming rods (0.3-0.5 × 1.0-2.0 µm), and motile by means of polar peritrichous flagella. Colonies on TSA are circular, convex, glistening, smooth, moderate yellow in colour and 1.0-2.0 mm in diameter after incubation for 6 days at 30°C.
Morphology standardized
cell shape | length | width |
---|---|---|
rod | 1.0-2.0 | 0.3-0.5 |
motility |
---|
- |
flagellum | arrangement |
---|---|
+ | polar; peritrichous |
Physiology
Oxygen requirement
obligately aerobic
GC
GC_content |
---|
71.0 |
Gram
staining |
---|
negative |
Growth temperature
optimum |
---|
30 |
range |
---|
10.0-39.0 |
C/N source
positive results | ||
---|---|---|
tween 20 | tyrosine | pyruvate |
negative results | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
xanthine | hypoxanthine | succinate | salicine | D-fructose | D-glucose | benzoate | D-trehalose | formate | L-glutamate | D-galactose | D-xylose | D-cellobiose |
Antibiotic
sensitivity | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
polymyxin_b | lincomycin | kanamycin | oxytetracycline | carbenicillin | cefalothin | chloramfenicol | streptomycin | ampicillin | oleandomycin | penicillin_g | gentamicin | neomycin | novobiocin | tetracycline |
Biochemistry
Fattyacids
Name | Account |
---|---|
anteiso-C17:0 | 7.7 |
iso-C17:1 ω9c | 31.2 |
iso-C11:0 3-OH | 6.8 |
iso-C16:0 | 6.2 |
iso-C15:0 | 10.1 |
iso-C17:0 | 19.8 |
Indole pdu
-
Polar lipids
DPG;PG;PE
Quinones
UQ-8
Enzymology
Enzyme | Activity |
---|---|
acetyl β-glucosaminidase | - |
acid phosphatase | + |
alkaline phosphatase | + |
arginine dihydrolase | - |
catalase | + |
cystine arylamidase | - |
esterase C4 | + |
esterase C8 | + |
leucine arylamidase | - |
lipase C14 | - |
lysine decarboxylase | - |
naphthol AS-BI-phosphohydrolase | + |
ornithine decarboxylase | - |
oxidase | + |
trypsin | - |
tryptophan deaminase | - |
urease | - |
valine arylamidase | - |
α-chymotrypsin | - |
α-fucosidase | - |
α-galactosidase | - |
α-glucosidase | - |
α-mannosidase | - |
β-glucuronidase | - |
Taxonomy marker
Genomics
Submitter date: 2016/04/27 00:00 Update date: 2016/08/18 00:00
Source
Yonsei University
Coverage
199.67
Assembly status
Complete Genome
Assembly class
haploid
Strain List
References
1
Yoon, J.-H., Kang, S.-J., and Oh, T.-K. Dokdonella koreensis gen. nov., sp. nov., isolated from an island, Dokdo, in the East Sea in Korea. Int. J. Syst. Evol. Microbiol. (2006) 56:145-150.[DOI:10.1099/ijs.0.63802-0]
[PMID:16403879]