GT

GTdock

GTdock using AutoDock Vina performs several glycosyltransferases docking with the same one acceptor and displays results based on 3Dmol.js to provide an interactive interface to view binding mode easily.

Note:

1. If you only have sequence data, you can visit the following website for protein structure prediction:

https://www.swissmodel.expasy.org/interactive

http://www.sbg.bio.ic.ac.uk/phyre2/html/page.cgi?id=index

https://zhanglab.ccmb.med.umich.edu/I-TASSER/

2. When the identities ≧ 40% and expect ≦ 0.01 by BLAST in GTDB, the protein could be a candidate for GTdock.

Step 1 - Choose one acceptor of interest or upload custom acceptor with SDF format.

Select acceptor

Or Upload SDF file

Reset acceptor

Step 2 - Upload less than 10 protein structures with PDB format and monomers are recommended.

Add protein structure PDB file.

Step 3 - GTdock automatically

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GTdock

GTdock

Note:

Step 1 - Choose one acceptor of interest or upload custom acceptor with SDF format.

Step 2 - Upload less than 10 protein structures with PDB format and monomers are recommended.

Step 3 - Confirm whether these proteins are glycosyltransferases.

Step 3 - GTdock automatically