Basic information

CPKB ID CP00612
IUPAC Name
acetic acid;(2S)-N-[(2R)-1-[(2-amino-2-oxoethyl)amino]-5-(diaminomethylideneamino)-1-oxopentan-2-yl]-1-[(4R,7S,10S,13S,16S)-7-(2-amino-2-oxoethyl)-10-(3-amino-3-oxopropyl)-13-benzyl-16-[(4-hydroxyphenyl)methyl]-6,9,12,15,18-pentaoxo-1,2-dithia-5,8,11,14,17-pentazacycloicosane-4-carbonyl]pyrrolidine-2-carboxamide
Synonyms
Source

Synthetic construct [Division : Synthetic]

Wikipedia: Synthetic construct

PubChem  

Function

Anti-Diuretic   PubChem  

Information

A synthetic analog of the pituitary hormone, ARGININE VASOPRESSIN. Its action is mediated by the VASOPRESSIN receptor V2. It has prolonged antidiuretic activity, but little pressor effects. It also modulates levels of circulating FACTOR VIII and VON WILLEBRAND FACTOR. A synthetic analog of the pituitary hormone, ARGININE VASOPRESSIN. Its action is mediated by the VASOPRESSIN receptor V2. It has prolonged antidiuretic activity, but little pressor effects. It also modulates levels of circulating FACTOR VIII and VON WILLEBRAND FACTOR.

PubChem|9833407  

Legend

Structure

similarity structure
Molecular Formula

C48H68N14O14S2

Molecular Weight 1128.448085 g/mol
SMILES

RUN SEA Predictions

CC(=O)O.NC(=O)CC[C@@H]1NC(=O)[C@H](Cc2ccccc2)NC(=O)[C@H](Cc2ccc(O)cc2)NC(=O)CCSSC[C@@H](C(=O)N2CCC[C@H]2C(=O)N[C@H](CCCN=C(N)N)C(=O)NCC(N)=O)NC(=O)[C@H](CC(N)=O)NC1=O  

PubChem|9833407

InChI
InChI=1S/C46H64N14O12S2.C2H4O2/c47-35(62)15-14-29-40(67)58-32(22-36(48)63)43(70)59-33(45(72)60-18-5-9-34(60)44(71)56-28(8-4-17-52-46(50)51)39(66)53-23-37(49)64)24-74-73-19-16-38(65)54-30(21-26-10-12-27(61)13-11-26)41(68)57-31(42(69)55-29)20-25-6-2-1-3-7-25;1-2(3)4/h1-3,6-7,10-13,28-34,61H,4-5,8-9,14-24H2,(H2,47,62)(H2,48,63)(H2,49,64)(H,53,66)(H,54,65)(H,55,69)(H,56,71)(H,57,68)(H,58,67)(H,59,70)(H4,50,51,52);1H3,(H,3,4)/t28-,29+,30+,31+,32+,33+,34+;/m1./s1  
InChIKey
MLSVJHOYXJGGTR-IBZVUIFLNA-N
2D Structure
PubChem|9833407

Sequence

Graph alignment
Local alignment
IUPAC Condensed
deamino-Cys(1)-Tyr-Phe-Gln-Asn-Cys(1)-Pro-D-Arg-Gly-NH2.CH3CO2H  

PubChem|9833407

Amino acid chain
deamino--Cys(1)--Tyr--Phe--Gln--Asn--Cys(1)--Pro--D-Arg--Gly-NH2  

CyclicPepedia|PP

Graph representation
deamino,Cys,Tyr,Phe,Gln,Asn,Cys,Pro,D-Arg,Gly-NH2 @1,6  

CyclicPepedia|PP

One letter code from Structure
YFQNCPAG  

CyclicPepedia|Struct2seq

Amino acid chain from Structure
Ac-Phe(1)--Phe--Gln--Asn--Cys(1)--Pro--Arg--CO  

CyclicPepedia|Struct2seq

Description of the conversion sequence The one letter code and Amino acid chain derived from the structural transformation may be inconsistent, with the Amino acid chain containing Essential Amino acid and the one letter code not.
svg Image

PubChem|9833407


Chemical and Physical Properties

CyclicPepedia|Struc2Seq + PP

Structure Properties

Property Name Property Value
Exact Mass 1128.448085
Number of Rings 4.0
Complexity 0.743589744
XlogP3 AA -4.2508
Heavy Atom Count 78.0
Hydrogen Bond Donor Count 14.0
Hydrogen Bond Acceptor Count 16.0
Rotatable Bond Count 19.0
Property Name Property Value
Formal Charge 0.0
Refractivity 285.4735
Rule_of_Five 0.0
Number of Atoms 78.0
Topological Polar Surface Area 475.21
Refractivity 285.4735
Veber Rule 0.0
Ghose Filter 0.0

Property Name Property Value
RDKit Fingerprint
01100010100000101100100111011000110000100111110000101010100000000110101111101111101110010110110010010101010001001010011000110010000001001000110000101111000100000101001010100011100110001111100110100100101001001000000100000001010100000101011110011110011100101111000110001000000010001001100000000010011010010011001001010101010100000011111011110110101000000010011000001001100010000010000000100010010100000100100100001100000010100100101000110011110011100000100100010110111000010000000100000010101010010100100000101110110000010110100110011101100110001100101010011110101000100100010110000000000010111100101000111001101010011000100000001101100000111100001110110111011001000110001010000000010101001100011100011000101101000000100111110011001001011000101010110010001110101011101110011000000001100001001010011000001000001001110000001101111010110000011011111001010000110011011100010001010100000100111000010011001101101010111000010100011100111110010000011111011000001011110101010000011000010110001000110011010100000011000000111101001101110011110110001010100000101011000101001010101001100111100001001001110110000001001101011010000000101011100110001001110111001000111011011000100110100110100111001001010011101110111011000001000001001101110111101100011100110111010010010000111111000010001000001000000001111000110001001001011010100001000001110110101001010011101110010001011110110001010000010000000101001000001010000101110000001100100011000111101011001000000011111010001101001011101101111110110001100001010000111011011011010000101100100111010011100000001000010100110010101100100011100000101110100111001001010111100010000101000010000011000000100010110000010100000000100000010000010001001011010100101010000101000010010001011110000100110101000001010110111001100000100111011001010100100010010110100010001000100001010010000011010011111001101100100011110000011110100111110011000000100000000000100011100000010110001101101110010100101101000011010000010101001010010111110110100101111001011011001000000011001101100111000001001100110010011000001001101110000100000000111100000011
Morgan Fingerprint
0100100000100000000000000000000001000000001000000000010000000000100000000000000010000000001000000000000000000000000101000000000010000000000010011001000000000000000000000000010100000000000000000100010000000000000000000000000000000000000000000010000000000100000000000000000000000000000000000100000000000100000000100010000000000000000000000000000000000001001110000010000001000000000000000000010010000000001000000000000010000000000000001001000000000010000000001010000000100000000000100000000000000000000000010000100100000000000000000001000000001000010000010000000100000000000001000010000000000000001001000000000000000000100000001010000000000000000000000010000000000000010000000001000000001000010000000000000000000000001000001000011000100000100100000100000000100000000000010000000000000000000001000000001000001001000000000000000000001000100001000100001001000000000000000000000000100000000000010000010000010010000000000010000000000010000000010000000000000000000001000000000000000000001010000000000000000000000010000000000001010000
MACCS Keys
00000000000000100000000001000000000010000001000000000110000000000001000000010111101111001011100111001000101000110100011111111101110110001111101101111011111111111111111

Sequence Properties

Property Name Property Value
Boman Index 0.66375
Instability 53.3
Charge -0.0648408307509237
Aliphatic Index 12.5

Binding Target

Other evidence

Property Name Property ID
TTD D0U7SH
DrugMAP DMS3GVE

Manufacturers

Manufacturers Name Value
CreativePeptides
Bayer healthcare pharmaceuticals
Upsher smith laboratories
Merck
Manufacturers Name Value
Apotex
Baxter Healthcare Corp
Pharmasources
Novartis
AstraZeneca

Information Source

Property Name Property ID
Patents MLSVJHOYXJGGTR-IBZVUIFLNA-N
pubchem 9833407
Drugbank
DRAMP3
Uniprot
Cybase
CONOSERVER
BindingDB BDBM50247923
CHEMBL CHEMBL1200556
CTD D003894
Wikipedia
KEGG Compound/Drug
CHEBI MLSVJHOYXJGGTR-IBZVUIFLNA-N
EPA DSSTox DTXSID4046864
FDA Global Substance Registration System (GSRS) 1K12647SFC
DTP/NCI
Chemspider MLSVJHOYXJGGTR-IBZVUIFLNA-N

Reference

Pubmed_ID Title DOI Journal

10479320

New geodiamolides from the sponge Cymbastela sp. collected in Papua New Guinea 10.1021/np990155o.

J Nat Prod

New geodiamolides from the sponge Cymbastela sp. collected in Papua New Guinea

Abstract

  • Geodiamolides J-P (11-17) and R (19), eight new cyclic depsipetides, have been isolated from the marine sponge Cymbastela sp. collected in Papua New Guinea. The serine residue in geodiamolides L-P (13-17) and R (19) has not been previously found in this family of compounds.