Basic Information
Accession number
GCA_000007205.1
Release date
2003-07-25
Organism
Chlamydia pneumoniae TW-183
Species name
Chlamydia pneumoniae

Assembly level
Complete Genome
Assembly name
ASM720v1
Assembly submitter
RDR/IT, RDR/FG, RDR/BT, ALTANA Pharma
Assembly Type
haploid
Genome size
1.2 Mb
GC percent
40.5
Contig count
1

Collection date
-
Sample location
-
Host
-
Isolation source
-
Isolate type
-
Strain
TW-183
Isolate
-
VF List
Query_id %Identity E-value Related genes VF ID Virulence factor VFcategory VFcategoryID Characteristics Description Strain
AE009440.1_70 68.274 0.0 tufA VF0460 EF-Tu Adherence VFC0001 (tufA) elongation factor Tu [EF-Tu (VF0460) - Adherence (VFC0001)] [Francisella tularensis subsp. tularensis SCHU S4] Francisella tularensis
AE009440.1_130 61.321 0.0 groEL VF0594 GroEL Adherence VFC0001 GroEL of numerous bacteria, such as L. pneumophila, H. pylori, H. ducreyi, M. avium, S. typhimurium, A. actinomycetemcomitans and B. burgdorferi, has been shown to be involved in adhesion or invasion of various target cells or tissues. (groEL) chaperonin GroEL [GroEL (VF0594) - Adherence (VFC0001)] [Clostridium difficile 630] Clostridium difficile
AE009440.1_198 75.403 4.21E-140 CT_203 VF0711 TTSS secreted effectors Effector delivery system VFC0086 (CT_203) hypothetical protein [TTSS secreted effectors (VF0711) - Effector delivery system (VFC0086)] [Chlamydia trachomatis D/UW-3/CX] Chlamydia trachomatis
AE009440.1_313 82.778 0.0 cdsU VF0344 TTSS Effector delivery system VFC0086 Type III secretion genes of Proteobacteria are usually tightly clustered in a pathogenicity island or on a plasmid, suggesting that they can be horizontally transferred as a unit. But chlamydial type III secretion loci are dispersed in at least three different chromosomal locations; The G+C contents of these loci, are similar to the overall G+C content of the genome, suggesting that the type III system has been present in chlamydiae for a long time and has been essential to their parasitic lifestyle. On the basis of this loose retainment of operon organization and the significant divergence from other type III systems, it has been postulated an ancient acquisition of the type III system by chlamydiae (cdsU) Type III secretion protein CdsU [TTSS (VF0344) - Effector delivery system (VFC0086)] [Chlamydia trachomatis D/UW-3/CX] Chlamydia trachomatis
AE009440.1_314 90.986 0.0 cdsV VF0344 TTSS Effector delivery system VFC0086 Type III secretion genes of Proteobacteria are usually tightly clustered in a pathogenicity island or on a plasmid, suggesting that they can be horizontally transferred as a unit. But chlamydial type III secretion loci are dispersed in at least three different chromosomal locations; The G+C contents of these loci, are similar to the overall G+C content of the genome, suggesting that the type III system has been present in chlamydiae for a long time and has been essential to their parasitic lifestyle. On the basis of this loose retainment of operon organization and the significant divergence from other type III systems, it has been postulated an ancient acquisition of the type III system by chlamydiae (cdsV) Type III secretion protein CdsV [TTSS (VF0344) - Effector delivery system (VFC0086)] [Chlamydia trachomatis D/UW-3/CX] Chlamydia trachomatis
AE009440.1_316 63.014 1.38E-66 scc1 VF0344 TTSS Effector delivery system VFC0086 Type III secretion genes of Proteobacteria are usually tightly clustered in a pathogenicity island or on a plasmid, suggesting that they can be horizontally transferred as a unit. But chlamydial type III secretion loci are dispersed in at least three different chromosomal locations; The G+C contents of these loci, are similar to the overall G+C content of the genome, suggesting that the type III system has been present in chlamydiae for a long time and has been essential to their parasitic lifestyle. On the basis of this loose retainment of operon organization and the significant divergence from other type III systems, it has been postulated an ancient acquisition of the type III system by chlamydiae (scc1) chaperone for CopN [TTSS (VF0344) - Effector delivery system (VFC0086)] [Chlamydia trachomatis D/UW-3/CX] Chlamydia trachomatis
AE009440.1_350 70.635 9.26E-133 CT_061 VF0711 TTSS secreted effectors Effector delivery system VFC0086 (CT_061) RNA polymerase sigma factor sigma-28 [TTSS secreted effectors (VF0711) - Effector delivery system (VFC0086)] [Chlamydia trachomatis D/UW-3/CX] Chlamydia trachomatis
AE009440.1_367 81.081 6.4E-88 CT_053 VF0711 TTSS secreted effectors Effector delivery system VFC0086 (CT_053) hypothetical protein [TTSS secreted effectors (VF0711) - Effector delivery system (VFC0086)] [Chlamydia trachomatis D/UW-3/CX] Chlamydia trachomatis
AE009440.1_375 96.575 8.76E-96 slc1 VF0344 TTSS Effector delivery system VFC0086 Type III secretion genes of Proteobacteria are usually tightly clustered in a pathogenicity island or on a plasmid, suggesting that they can be horizontally transferred as a unit. But chlamydial type III secretion loci are dispersed in at least three different chromosomal locations; The G+C contents of these loci, are similar to the overall G+C content of the genome, suggesting that the type III system has been present in chlamydiae for a long time and has been essential to their parasitic lifestyle. On the basis of this loose retainment of operon organization and the significant divergence from other type III systems, it has been postulated an ancient acquisition of the type III system by chlamydiae (slc1) T3S chaperone for TARP, CT875 [TTSS (VF0344) - Effector delivery system (VFC0086)] [Chlamydia trachomatis D/UW-3/CX] Chlamydia trachomatis
AE009440.1_376 62.027 0.0 glgX VF0711 TTSS secreted effectors Effector delivery system VFC0086 (glgX) glycogen hydrolase [TTSS secreted effectors (VF0711) - Effector delivery system (VFC0086)] [Chlamydia trachomatis D/UW-3/CX] Chlamydia trachomatis
AE009440.1_396 72.848 1.33E-83 mcsc VF0711 TTSS secreted effectors Effector delivery system VFC0086 (mcsc) T3S chaperone [TTSS secreted effectors (VF0711) - Effector delivery system (VFC0086)] [Chlamydia trachomatis D/UW-3/CX] Chlamydia trachomatis
AE009440.1_410 87.879 3.16E-85 CT274 VF0344 TTSS Effector delivery system VFC0086 Type III secretion genes of Proteobacteria are usually tightly clustered in a pathogenicity island or on a plasmid, suggesting that they can be horizontally transferred as a unit. But chlamydial type III secretion loci are dispersed in at least three different chromosomal locations; The G+C contents of these loci, are similar to the overall G+C content of the genome, suggesting that the type III system has been present in chlamydiae for a long time and has been essential to their parasitic lifestyle. On the basis of this loose retainment of operon organization and the significant divergence from other type III systems, it has been postulated an ancient acquisition of the type III system by chlamydiae (CT274) putative T3S chaperone [TTSS (VF0344) - Effector delivery system (VFC0086)] [Chlamydia trachomatis D/UW-3/CX] Chlamydia trachomatis
AE009440.1_502 88.136 0.0 CT_429 VF0711 TTSS secreted effectors Effector delivery system VFC0086 (CT_429) hypothetical protein [TTSS secreted effectors (VF0711) - Effector delivery system (VFC0086)] [Chlamydia trachomatis D/UW-3/CX] Chlamydia trachomatis
AE009440.1_509 82.283 5.92E-142 cdsZ VF0711 TTSS secreted effectors Effector delivery system VFC0086 (cdsZ) hypothetical protein [TTSS secreted effectors (VF0711) - Effector delivery system (VFC0086)] [Chlamydia trachomatis D/UW-3/CX] Chlamydia trachomatis
AE009440.1_541 71.634 0.0 omcB VF1347 OmcB Adherence VFC0001 A 60-kDa, cysteine-rich protein; all the OmcB proteins of Chlamydiae possess at least one XBBXBX sequence in their N-terminal domains (omcB) outer membrane protein OmcB [OmcB (VF1347) - Adherence (VFC0001)] [Chlamydia trachomatis D/UW-3/CX] Chlamydia trachomatis
AE009440.1_679 64.81 0.0 ompA VF1349 MOMP Adherence VFC0001 (ompA) outer membrane protein OmpA [MOMP (VF1349) - Adherence (VFC0001)] [Chlamydia trachomatis D/UW-3/CX] Chlamydia trachomatis
AE009440.1_686 69.444 0.0 cdsC VF0344 TTSS Effector delivery system VFC0086 Type III secretion genes of Proteobacteria are usually tightly clustered in a pathogenicity island or on a plasmid, suggesting that they can be horizontally transferred as a unit. But chlamydial type III secretion loci are dispersed in at least three different chromosomal locations; The G+C contents of these loci, are similar to the overall G+C content of the genome, suggesting that the type III system has been present in chlamydiae for a long time and has been essential to their parasitic lifestyle. On the basis of this loose retainment of operon organization and the significant divergence from other type III systems, it has been postulated an ancient acquisition of the type III system by chlamydiae (cdsC) Type III secretion system protein CdsC [TTSS (VF0344) - Effector delivery system (VFC0086)] [Chlamydia trachomatis D/UW-3/CX] Chlamydia trachomatis
AE009440.1_690 84.94 1.98E-96 cdsO VF0344 TTSS Effector delivery system VFC0086 Type III secretion genes of Proteobacteria are usually tightly clustered in a pathogenicity island or on a plasmid, suggesting that they can be horizontally transferred as a unit. But chlamydial type III secretion loci are dispersed in at least three different chromosomal locations; The G+C contents of these loci, are similar to the overall G+C content of the genome, suggesting that the type III system has been present in chlamydiae for a long time and has been essential to their parasitic lifestyle. On the basis of this loose retainment of operon organization and the significant divergence from other type III systems, it has been postulated an ancient acquisition of the type III system by chlamydiae (cdsO) Type III secretion system protein CdsO, YscO homolog [TTSS (VF0344) - Effector delivery system (VFC0086)] [Chlamydia trachomatis D/UW-3/CX] Chlamydia trachomatis
AE009440.1_691 92.308 0.0 cdsN VF0344 TTSS Effector delivery system VFC0086 Type III secretion genes of Proteobacteria are usually tightly clustered in a pathogenicity island or on a plasmid, suggesting that they can be horizontally transferred as a unit. But chlamydial type III secretion loci are dispersed in at least three different chromosomal locations; The G+C contents of these loci, are similar to the overall G+C content of the genome, suggesting that the type III system has been present in chlamydiae for a long time and has been essential to their parasitic lifestyle. On the basis of this loose retainment of operon organization and the significant divergence from other type III systems, it has been postulated an ancient acquisition of the type III system by chlamydiae (cdsN) Type III secretion system ATPase [TTSS (VF0344) - Effector delivery system (VFC0086)] [Chlamydia trachomatis D/UW-3/CX] Chlamydia trachomatis
AE009440.1_692 63.556 1.1E-97 CT_668 VF0711 TTSS secreted effectors Effector delivery system VFC0086 (CT_668) putative TTSS related protein [TTSS secreted effectors (VF0711) - Effector delivery system (VFC0086)] [Chlamydia trachomatis D/UW-3/CX] Chlamydia trachomatis
AE009440.1_693 66.892 1.19E-70 cdsG VF0344 TTSS Effector delivery system VFC0086 Type III secretion genes of Proteobacteria are usually tightly clustered in a pathogenicity island or on a plasmid, suggesting that they can be horizontally transferred as a unit. But chlamydial type III secretion loci are dispersed in at least three different chromosomal locations; The G+C contents of these loci, are similar to the overall G+C content of the genome, suggesting that the type III system has been present in chlamydiae for a long time and has been essential to their parasitic lifestyle. On the basis of this loose retainment of operon organization and the significant divergence from other type III systems, it has been postulated an ancient acquisition of the type III system by chlamydiae (cdsG) Type III secretion system protein CdsG [TTSS (VF0344) - Effector delivery system (VFC0086)] [Chlamydia trachomatis D/UW-3/CX] Chlamydia trachomatis
AE009440.1_694 93.671 4.85E-52 cdsF VF0344 TTSS Effector delivery system VFC0086 Type III secretion genes of Proteobacteria are usually tightly clustered in a pathogenicity island or on a plasmid, suggesting that they can be horizontally transferred as a unit. But chlamydial type III secretion loci are dispersed in at least three different chromosomal locations; The G+C contents of these loci, are similar to the overall G+C content of the genome, suggesting that the type III system has been present in chlamydiae for a long time and has been essential to their parasitic lifestyle. On the basis of this loose retainment of operon organization and the significant divergence from other type III systems, it has been postulated an ancient acquisition of the type III system by chlamydiae (cdsF) Type III secretion system needle-filament protein CdsF [TTSS (VF0344) - Effector delivery system (VFC0086)] [Chlamydia trachomatis D/UW-3/CX] Chlamydia trachomatis
AE009440.1_695 66.265 2.6E-33 cdsE VF0344 TTSS Effector delivery system VFC0086 Type III secretion genes of Proteobacteria are usually tightly clustered in a pathogenicity island or on a plasmid, suggesting that they can be horizontally transferred as a unit. But chlamydial type III secretion loci are dispersed in at least three different chromosomal locations; The G+C contents of these loci, are similar to the overall G+C content of the genome, suggesting that the type III system has been present in chlamydiae for a long time and has been essential to their parasitic lifestyle. On the basis of this loose retainment of operon organization and the significant divergence from other type III systems, it has been postulated an ancient acquisition of the type III system by chlamydiae (cdsE) Type III secretion system protein CdsE [TTSS (VF0344) - Effector delivery system (VFC0086)] [Chlamydia trachomatis D/UW-3/CX] Chlamydia trachomatis
AE009440.1_785 83.06 1.42E-114 CT_584 VF0344 TTSS Effector delivery system VFC0086 Type III secretion genes of Proteobacteria are usually tightly clustered in a pathogenicity island or on a plasmid, suggesting that they can be horizontally transferred as a unit. But chlamydial type III secretion loci are dispersed in at least three different chromosomal locations; The G+C contents of these loci, are similar to the overall G+C content of the genome, suggesting that the type III system has been present in chlamydiae for a long time and has been essential to their parasitic lifestyle. On the basis of this loose retainment of operon organization and the significant divergence from other type III systems, it has been postulated an ancient acquisition of the type III system by chlamydiae (CT_584) type III secreted effector, putative [TTSS (VF0344) - Effector delivery system (VFC0086)] [Chlamydia trachomatis D/UW-3/CX] Chlamydia trachomatis
AE009440.1_793 69.82 2.44E-114 scc2 VF0344 TTSS Effector delivery system VFC0086 Type III secretion genes of Proteobacteria are usually tightly clustered in a pathogenicity island or on a plasmid, suggesting that they can be horizontally transferred as a unit. But chlamydial type III secretion loci are dispersed in at least three different chromosomal locations; The G+C contents of these loci, are similar to the overall G+C content of the genome, suggesting that the type III system has been present in chlamydiae for a long time and has been essential to their parasitic lifestyle. On the basis of this loose retainment of operon organization and the significant divergence from other type III systems, it has been postulated an ancient acquisition of the type III system by chlamydiae (scc2) chaperone for CopD [TTSS (VF0344) - Effector delivery system (VFC0086)] [Chlamydia trachomatis D/UW-3/CX] Chlamydia trachomatis
AE009440.1_805 74.912 2.81E-165 cdsT VF0344 TTSS Effector delivery system VFC0086 Type III secretion genes of Proteobacteria are usually tightly clustered in a pathogenicity island or on a plasmid, suggesting that they can be horizontally transferred as a unit. But chlamydial type III secretion loci are dispersed in at least three different chromosomal locations; The G+C contents of these loci, are similar to the overall G+C content of the genome, suggesting that the type III system has been present in chlamydiae for a long time and has been essential to their parasitic lifestyle. On the basis of this loose retainment of operon organization and the significant divergence from other type III systems, it has been postulated an ancient acquisition of the type III system by chlamydiae (cdsT) Yop proteins translocation protein T [TTSS (VF0344) - Effector delivery system (VFC0086)] [Chlamydia trachomatis D/UW-3/CX] Chlamydia trachomatis
AE009440.1_806 88.889 6.94E-56 cdsS VF0344 TTSS Effector delivery system VFC0086 Type III secretion genes of Proteobacteria are usually tightly clustered in a pathogenicity island or on a plasmid, suggesting that they can be horizontally transferred as a unit. But chlamydial type III secretion loci are dispersed in at least three different chromosomal locations; The G+C contents of these loci, are similar to the overall G+C content of the genome, suggesting that the type III system has been present in chlamydiae for a long time and has been essential to their parasitic lifestyle. On the basis of this loose retainment of operon organization and the significant divergence from other type III systems, it has been postulated an ancient acquisition of the type III system by chlamydiae (cdsS) Yop proteins translocation protein S [TTSS (VF0344) - Effector delivery system (VFC0086)] [Chlamydia trachomatis D/UW-3/CX] Chlamydia trachomatis
AE009440.1_807 71.16 2.46E-151 cdsR VF0344 TTSS Effector delivery system VFC0086 Type III secretion genes of Proteobacteria are usually tightly clustered in a pathogenicity island or on a plasmid, suggesting that they can be horizontally transferred as a unit. But chlamydial type III secretion loci are dispersed in at least three different chromosomal locations; The G+C contents of these loci, are similar to the overall G+C content of the genome, suggesting that the type III system has been present in chlamydiae for a long time and has been essential to their parasitic lifestyle. On the basis of this loose retainment of operon organization and the significant divergence from other type III systems, it has been postulated an ancient acquisition of the type III system by chlamydiae (cdsR) type III secretion protein [TTSS (VF0344) - Effector delivery system (VFC0086)] [Chlamydia trachomatis D/UW-3/CX] Chlamydia trachomatis
AE009440.1_808 65.877 1.4E-103 cdsL VF0344 TTSS Effector delivery system VFC0086 Type III secretion genes of Proteobacteria are usually tightly clustered in a pathogenicity island or on a plasmid, suggesting that they can be horizontally transferred as a unit. But chlamydial type III secretion loci are dispersed in at least three different chromosomal locations; The G+C contents of these loci, are similar to the overall G+C content of the genome, suggesting that the type III system has been present in chlamydiae for a long time and has been essential to their parasitic lifestyle. On the basis of this loose retainment of operon organization and the significant divergence from other type III systems, it has been postulated an ancient acquisition of the type III system by chlamydiae (cdsL) type III secretion translocase [TTSS (VF0344) - Effector delivery system (VFC0086)] [Chlamydia trachomatis D/UW-3/CX] Chlamydia trachomatis
AE009440.1_809 64.029 1.07E-131 CT_560 VF0344 TTSS Effector delivery system VFC0086 Type III secretion genes of Proteobacteria are usually tightly clustered in a pathogenicity island or on a plasmid, suggesting that they can be horizontally transferred as a unit. But chlamydial type III secretion loci are dispersed in at least three different chromosomal locations; The G+C contents of these loci, are similar to the overall G+C content of the genome, suggesting that the type III system has been present in chlamydiae for a long time and has been essential to their parasitic lifestyle. On the basis of this loose retainment of operon organization and the significant divergence from other type III systems, it has been postulated an ancient acquisition of the type III system by chlamydiae (CT_560) hypothetical protein [TTSS (VF0344) - Effector delivery system (VFC0086)] [Chlamydia trachomatis D/UW-3/CX] Chlamydia trachomatis
AE009440.1_810 76.174 9.47E-162 cdsJ VF0344 TTSS Effector delivery system VFC0086 Type III secretion genes of Proteobacteria are usually tightly clustered in a pathogenicity island or on a plasmid, suggesting that they can be horizontally transferred as a unit. But chlamydial type III secretion loci are dispersed in at least three different chromosomal locations; The G+C contents of these loci, are similar to the overall G+C content of the genome, suggesting that the type III system has been present in chlamydiae for a long time and has been essential to their parasitic lifestyle. On the basis of this loose retainment of operon organization and the significant divergence from other type III systems, it has been postulated an ancient acquisition of the type III system by chlamydiae (cdsJ) Type III secretion system inner membrane ring complex protein CdsJ [TTSS (VF0344) - Effector delivery system (VFC0086)] [Chlamydia trachomatis D/UW-3/CX] Chlamydia trachomatis
AE009440.1_840 68.15 0.0 filI VF0344 TTSS Effector delivery system VFC0086 Type III secretion genes of Proteobacteria are usually tightly clustered in a pathogenicity island or on a plasmid, suggesting that they can be horizontally transferred as a unit. But chlamydial type III secretion loci are dispersed in at least three different chromosomal locations; The G+C contents of these loci, are similar to the overall G+C content of the genome, suggesting that the type III system has been present in chlamydiae for a long time and has been essential to their parasitic lifestyle. On the basis of this loose retainment of operon organization and the significant divergence from other type III systems, it has been postulated an ancient acquisition of the type III system by chlamydiae (filI) type III secretion system ATPase [TTSS (VF0344) - Effector delivery system (VFC0086)] [Chlamydia trachomatis D/UW-3/CX] Chlamydia trachomatis
AE009440.1_860 61.991 5.89E-107 NUE VF0711 TTSS secreted effectors Effector delivery system VFC0086 (NUE) hypothetical protein [TTSS secreted effectors (VF0711) - Effector delivery system (VFC0086)] [Chlamydia trachomatis D/UW-3/CX] Chlamydia trachomatis
AE009440.1_861 70.039 1.35E-136 yycJ VF0711 TTSS secreted effectors Effector delivery system VFC0086 (yycJ) Zn-dependent hydrolase [TTSS secreted effectors (VF0711) - Effector delivery system (VFC0086)] [Chlamydia trachomatis D/UW-3/CX] Chlamydia trachomatis
AE009440.1_986 66.25 1.05E-65 CT_847 VF0711 TTSS secreted effectors Effector delivery system VFC0086 (CT_847) Type III secretion system effector [TTSS secreted effectors (VF0711) - Effector delivery system (VFC0086)] [Chlamydia trachomatis D/UW-3/CX] Chlamydia trachomatis
AE009440.1_987 73.563 1.12E-87 CT_848 VF0711 TTSS secreted effectors Effector delivery system VFC0086 (CT_848) hypothetical protein [TTSS secreted effectors (VF0711) - Effector delivery system (VFC0086)] [Chlamydia trachomatis D/UW-3/CX] Chlamydia trachomatis
AE009440.1_988 83.333 2.12E-83 CT_849 VF0711 TTSS secreted effectors Effector delivery system VFC0086 (CT_849) hypothetical protein [TTSS secreted effectors (VF0711) - Effector delivery system (VFC0086)] [Chlamydia trachomatis D/UW-3/CX] Chlamydia trachomatis
AE009440.1_1004 67.251 1.1E-83 scc3 VF0344 TTSS Effector delivery system VFC0086 Type III secretion genes of Proteobacteria are usually tightly clustered in a pathogenicity island or on a plasmid, suggesting that they can be horizontally transferred as a unit. But chlamydial type III secretion loci are dispersed in at least three different chromosomal locations; The G+C contents of these loci, are similar to the overall G+C content of the genome, suggesting that the type III system has been present in chlamydiae for a long time and has been essential to their parasitic lifestyle. On the basis of this loose retainment of operon organization and the significant divergence from other type III systems, it has been postulated an ancient acquisition of the type III system by chlamydiae (scc3) chaperone [TTSS (VF0344) - Effector delivery system (VFC0086)] [Chlamydia trachomatis D/UW-3/CX] Chlamydia trachomatis